Cluster: HRGMv2_4186_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4186
- CGC Family ID: CGCFAM_10549
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4186_26 | HRGMv2_4186_26_18 | 17602 | 18813 | + | 8.A.1.6.1 |
| TC | HRGMv2_4186_26 | HRGMv2_4186_26_19 | 18830 | 21940 | + | 2.A.6.2.2 |
| TC | HRGMv2_4186_26 | HRGMv2_4186_26_20 | 22033 | 23298 | - | 2.A.40.1.4 |
| pfam | HRGMv2_4186_26 | HRGMv2_4186_26_21 | 23596 | 24762 | + | DUF2066 |
| pfam | HRGMv2_4186_26 | HRGMv2_4186_26_22 | 24885 | 25316 | - | DUF2069 |
| CAZyme | HRGMv2_4186_26 | HRGMv2_4186_26_23 | 25357 | 25932 | - | AA6 |
Gene ID: HRGMv2_4186_26_18
Type: TC
Location: 17602 - 18813 (+)
Type: TC
Location: 17602 - 18813 (+)
Gene ID: HRGMv2_4186_26_19
Type: TC
Location: 18830 - 21940 (+)
Type: TC
Location: 18830 - 21940 (+)
Gene ID: HRGMv2_4186_26_20
Type: TC
Location: 22033 - 23298 (-)
Type: TC
Location: 22033 - 23298 (-)
Gene ID: HRGMv2_4186_26_21
Type: pfam
Location: 23596 - 24762 (+)
Type: pfam
Location: 23596 - 24762 (+)
Gene ID: HRGMv2_4186_26_22
Type: pfam
Location: 24885 - 25316 (-)
Type: pfam
Location: 24885 - 25316 (-)
Gene ID: HRGMv2_4186_26_23
Type: CAZyme
Location: 25357 - 25932 (-)
Type: CAZyme
Location: 25357 - 25932 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.