Cluster: HRGMv2_4186_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4186
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4186_23 | HRGMv2_4186_23_44 | 58675 | 61176 | - | 4.A.2.1.11 |
| TC | HRGMv2_4186_23 | HRGMv2_4186_23_45 | 61200 | 61517 | - | 4.A.2.1.10 |
| pfam | HRGMv2_4186_23 | HRGMv2_4186_23_46 | 61907 | 62494 | - | UDG |
| CAZyme | HRGMv2_4186_23 | HRGMv2_4186_23_47 | 62878 | 65391 | + | GH92 |
| CAZyme | HRGMv2_4186_23 | HRGMv2_4186_23_48 | 65544 | 68258 | + | GH92 |
| pfam | HRGMv2_4186_23 | HRGMv2_4186_23_49 | 68787 | 69146 | + | Acetyltransf_3 |
| CAZyme | HRGMv2_4186_23 | HRGMv2_4186_23_50 | 69527 | 71956 | + | GH92 |
Gene ID: HRGMv2_4186_23_44
Type: TC
Location: 58675 - 61176 (-)
Type: TC
Location: 58675 - 61176 (-)
Gene ID: HRGMv2_4186_23_45
Type: TC
Location: 61200 - 61517 (-)
Type: TC
Location: 61200 - 61517 (-)
Gene ID: HRGMv2_4186_23_46
Type: pfam
Location: 61907 - 62494 (-)
Type: pfam
Location: 61907 - 62494 (-)
Gene ID: HRGMv2_4186_23_47
Type: CAZyme
Location: 62878 - 65391 (+)
Type: CAZyme
Location: 62878 - 65391 (+)
Gene ID: HRGMv2_4186_23_48
Type: CAZyme
Location: 65544 - 68258 (+)
Type: CAZyme
Location: 65544 - 68258 (+)
Gene ID: HRGMv2_4186_23_49
Type: pfam
Location: 68787 - 69146 (+)
Type: pfam
Location: 68787 - 69146 (+)
Gene ID: HRGMv2_4186_23_50
Type: CAZyme
Location: 69527 - 71956 (+)
Type: CAZyme
Location: 69527 - 71956 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Vibrionaceae
Genus
Photobacterium
Species
Photobacterium damselae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.