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Cluster: HRGMv2_4162_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4162_34 HRGMv2_4162_34_36 37170 37916 - GT2
NULL(UNKNOWN) HRGMv2_4162_34 HRGMv2_4162_34_37 37933 39153 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4162_34 HRGMv2_4162_34_38 39128 40345 - GT4
pfam HRGMv2_4162_34 HRGMv2_4162_34_39 40342 40833 - Hexapep
CAZyme HRGMv2_4162_34 HRGMv2_4162_34_40 40833 41642 - GT2
TC HRGMv2_4162_34 HRGMv2_4162_34_41 41748 43910 - 8.A.3.3.2
pfam HRGMv2_4162_34 HRGMv2_4162_34_42 43913 44356 - LMWPc
TC HRGMv2_4162_34 HRGMv2_4162_34_43 44363 44740 - 1.B.18.3.1
Gene ID: HRGMv2_4162_34_36
Type: CAZyme
Location: 37170 - 37916 (-)
Gene ID: HRGMv2_4162_34_37
Type:
Location: 37933 - 39153 (-)
Gene ID: HRGMv2_4162_34_38
Type: CAZyme
Location: 39128 - 40345 (-)
Gene ID: HRGMv2_4162_34_39
Type: pfam
Location: 40342 - 40833 (-)
Gene ID: HRGMv2_4162_34_40
Type: CAZyme
Location: 40833 - 41642 (-)
Gene ID: HRGMv2_4162_34_41
Type: TC
Location: 41748 - 43910 (-)
Gene ID: HRGMv2_4162_34_42
Type: pfam
Location: 43913 - 44356 (-)
Gene ID: HRGMv2_4162_34_43
Type: TC
Location: 44363 - 44740 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4162_34_42 vegetarian > vegan 1.57716 0.01976

🧭 Explore Read Mapping of CGC

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