Cluster: HRGMv2_4121_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4121
- CGC Family ID: CGCFAM_00050
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4121_10 | HRGMv2_4121_10_55 | 67879 | 69354 | - | 2.A.66.2.23 |
| CAZyme | HRGMv2_4121_10 | HRGMv2_4121_10_56 | 69389 | 70378 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4121_10 | HRGMv2_4121_10_57 | 70366 | 71604 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4121_10 | HRGMv2_4121_10_58 | 71850 | 73136 | - | GT4 |
| CAZyme | HRGMv2_4121_10 | HRGMv2_4121_10_59 | 73133 | 74239 | - | GT4 |
| pfam | HRGMv2_4121_10 | HRGMv2_4121_10_60 | 74230 | 75234 | - | Radical_SAM | SPASM |
| TC | HRGMv2_4121_10 | HRGMv2_4121_10_61 | 75363 | 76046 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_4121_10_55
Type: TC
Location: 67879 - 69354 (-)
Type: TC
Location: 67879 - 69354 (-)
Gene ID: HRGMv2_4121_10_56
Type: CAZyme
Location: 69389 - 70378 (-)
Type: CAZyme
Location: 69389 - 70378 (-)
Gene ID: HRGMv2_4121_10_57
Type:
Location: 70366 - 71604 (-)
Type:
Location: 70366 - 71604 (-)
Gene ID: HRGMv2_4121_10_58
Type: CAZyme
Location: 71850 - 73136 (-)
Type: CAZyme
Location: 71850 - 73136 (-)
Gene ID: HRGMv2_4121_10_59
Type: CAZyme
Location: 73133 - 74239 (-)
Type: CAZyme
Location: 73133 - 74239 (-)
Gene ID: HRGMv2_4121_10_60
Type: pfam
Location: 74230 - 75234 (-)
Type: pfam
Location: 74230 - 75234 (-)
Gene ID: HRGMv2_4121_10_61
Type: TC
Location: 75363 - 76046 (-)
Type: TC
Location: 75363 - 76046 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Slackia
Species
Slackia equolifaciens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.