Cluster: HRGMv2_4064_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4064
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4064_8 | HRGMv2_4064_8_12 | 13114 | 14739 | - | 2.A.66.2.16 |
| TC | HRGMv2_4064_8 | HRGMv2_4064_8_13 | 14924 | 16639 | - | 2.A.66.2.16 |
| pfam | HRGMv2_4064_8 | HRGMv2_4064_8_14 | 16654 | 17829 | - | EpsG |
| CAZyme | HRGMv2_4064_8 | HRGMv2_4064_8_15 | 17839 | 18588 | - | GT111 |
| pfam | HRGMv2_4064_8 | HRGMv2_4064_8_16 | 18629 | 19465 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_4064_8 | HRGMv2_4064_8_17 | 19462 | 20448 | - | GT2 |
Gene ID: HRGMv2_4064_8_12
Type: TC
Location: 13114 - 14739 (-)
Type: TC
Location: 13114 - 14739 (-)
Gene ID: HRGMv2_4064_8_13
Type: TC
Location: 14924 - 16639 (-)
Type: TC
Location: 14924 - 16639 (-)
Gene ID: HRGMv2_4064_8_14
Type: pfam
Location: 16654 - 17829 (-)
Type: pfam
Location: 16654 - 17829 (-)
Gene ID: HRGMv2_4064_8_15
Type: CAZyme
Location: 17839 - 18588 (-)
Type: CAZyme
Location: 17839 - 18588 (-)
Gene ID: HRGMv2_4064_8_16
Type: pfam
Location: 18629 - 19465 (-)
Type: pfam
Location: 18629 - 19465 (-)
Gene ID: HRGMv2_4064_8_17
Type: CAZyme
Location: 19462 - 20448 (-)
Type: CAZyme
Location: 19462 - 20448 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp949292715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.