Cluster: HRGMv2_4064_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4064
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4064_6 | HRGMv2_4064_6_8 | 2959 | 4155 | - | 2.A.119.1.3 |
| TF | HRGMv2_4064_6 | HRGMv2_4064_6_9 | 4225 | 4524 | - | HTH_5 |
| NULL(UNKNOWN) | HRGMv2_4064_6 | HRGMv2_4064_6_10 | 4697 | 5101 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4064_6 | HRGMv2_4064_6_11 | 5098 | 8238 | - | GH3 |
| TC | HRGMv2_4064_6 | HRGMv2_4064_6_12 | 8485 | 9795 | - | 2.A.1.24.4 |
| pfam | HRGMv2_4064_6 | HRGMv2_4064_6_13 | 9808 | 10602 | - | Zn_dep_PLPC |
| TC | HRGMv2_4064_6 | HRGMv2_4064_6_14 | 10830 | 12110 | + | 2.A.45.2.6 |
Gene ID: HRGMv2_4064_6_8
Type: TC
Location: 2959 - 4155 (-)
Type: TC
Location: 2959 - 4155 (-)
Gene ID: HRGMv2_4064_6_9
Type: TF
Location: 4225 - 4524 (-)
Type: TF
Location: 4225 - 4524 (-)
Gene ID: HRGMv2_4064_6_10
Type:
Location: 4697 - 5101 (-)
Type:
Location: 4697 - 5101 (-)
Gene ID: HRGMv2_4064_6_11
Type: CAZyme
Location: 5098 - 8238 (-)
Type: CAZyme
Location: 5098 - 8238 (-)
Gene ID: HRGMv2_4064_6_12
Type: TC
Location: 8485 - 9795 (-)
Type: TC
Location: 8485 - 9795 (-)
Gene ID: HRGMv2_4064_6_13
Type: pfam
Location: 9808 - 10602 (-)
Type: pfam
Location: 9808 - 10602 (-)
Gene ID: HRGMv2_4064_6_14
Type: TC
Location: 10830 - 12110 (+)
Type: TC
Location: 10830 - 12110 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp949292715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.