Cluster: HRGMv2_4064_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4064
- CGC Family ID: CGCFAM_03283
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4064_5 | HRGMv2_4064_5_7 | 12563 | 13267 | + | 9.B.156.3.1 |
| TC | HRGMv2_4064_5 | HRGMv2_4064_5_8 | 13270 | 13776 | + | 9.B.156.3.1 |
| pfam | HRGMv2_4064_5 | HRGMv2_4064_5_9 | 13823 | 15355 | - | Big_3 | Big_3 |
| CAZyme | HRGMv2_4064_5 | HRGMv2_4064_5_10 | 15374 | 20020 | - | GH3 |
| CAZyme | HRGMv2_4064_5 | HRGMv2_4064_5_11 | 20035 | 24306 | - | GH3 |
Gene ID: HRGMv2_4064_5_7
Type: TC
Location: 12563 - 13267 (+)
Type: TC
Location: 12563 - 13267 (+)
Gene ID: HRGMv2_4064_5_8
Type: TC
Location: 13270 - 13776 (+)
Type: TC
Location: 13270 - 13776 (+)
Gene ID: HRGMv2_4064_5_9
Type: pfam
Location: 13823 - 15355 (-)
Type: pfam
Location: 13823 - 15355 (-)
Gene ID: HRGMv2_4064_5_10
Type: CAZyme
Location: 15374 - 20020 (-)
Type: CAZyme
Location: 15374 - 20020 (-)
Gene ID: HRGMv2_4064_5_11
Type: CAZyme
Location: 20035 - 24306 (-)
Type: CAZyme
Location: 20035 - 24306 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp949292715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.