Cluster: HRGMv2_4064_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4064
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4064_2 | HRGMv2_4064_2_142 | 160147 | 160818 | - | 4.F.1.1.8 |
| pfam | HRGMv2_4064_2 | HRGMv2_4064_2_143 | 160815 | 162113 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_4064_2 | HRGMv2_4064_2_144 | 162106 | 165522 | - | 3.A.12.1.1 |
| peptidase | HRGMv2_4064_2 | HRGMv2_4064_2_145 | 165818 | 167083 | - | M16.UPB |
| CAZyme | HRGMv2_4064_2 | HRGMv2_4064_2_146 | 167121 | 167822 | - | CE4 |
Gene ID: HRGMv2_4064_2_142
Type: TC
Location: 160147 - 160818 (-)
Type: TC
Location: 160147 - 160818 (-)
Gene ID: HRGMv2_4064_2_143
Type: pfam
Location: 160815 - 162113 (-)
Type: pfam
Location: 160815 - 162113 (-)
Gene ID: HRGMv2_4064_2_144
Type: TC
Location: 162106 - 165522 (-)
Type: TC
Location: 162106 - 165522 (-)
Gene ID: HRGMv2_4064_2_145
Type: peptidase
Location: 165818 - 167083 (-)
Type: peptidase
Location: 165818 - 167083 (-)
Gene ID: HRGMv2_4064_2_146
Type: CAZyme
Location: 167121 - 167822 (-)
Type: CAZyme
Location: 167121 - 167822 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp949292715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.