dbCAN Logo

Cluster: HRGMv2_4064_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4064_1 HRGMv2_4064_1_83 84745 85521 + 3.A.1.3.10
TC HRGMv2_4064_1 HRGMv2_4064_1_84 85521 86159 + 3.A.1.3.14
TC HRGMv2_4064_1 HRGMv2_4064_1_85 86163 87047 + 3.A.1.3.14
pfam HRGMv2_4064_1 HRGMv2_4064_1_86 87284 88804 + Ribosomal_L27A
pfam HRGMv2_4064_1 HRGMv2_4064_1_87 88906 89499 - Rubrerythrin | RUBY_RBDX
CAZyme HRGMv2_4064_1 HRGMv2_4064_1_88 89625 90761 + GT4
TF HRGMv2_4064_1 HRGMv2_4064_1_89 90966 91703 + LytTR
pfam HRGMv2_4064_1 HRGMv2_4064_1_90 91703 93046 + HATPase_c_5
CAZyme HRGMv2_4064_1 HRGMv2_4064_1_91 93286 96360 + GH3
Gene ID: HRGMv2_4064_1_83
Type: TC
Location: 84745 - 85521 (+)
Gene ID: HRGMv2_4064_1_84
Type: TC
Location: 85521 - 86159 (+)
Gene ID: HRGMv2_4064_1_85
Type: TC
Location: 86163 - 87047 (+)
Gene ID: HRGMv2_4064_1_86
Type: pfam
Location: 87284 - 88804 (+)
Gene ID: HRGMv2_4064_1_87
Type: pfam
Location: 88906 - 89499 (-)
Gene ID: HRGMv2_4064_1_88
Type: CAZyme
Location: 89625 - 90761 (+)
Gene ID: HRGMv2_4064_1_89
Type: TF
Location: 90966 - 91703 (+)
Gene ID: HRGMv2_4064_1_90
Type: pfam
Location: 91703 - 93046 (+)
Gene ID: HRGMv2_4064_1_91
Type: CAZyme
Location: 93286 - 96360 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List