Cluster: HRGMv2_4064_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4064
- CGC Family ID: CGCFAM_02548
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4064_1 | HRGMv2_4064_1_75 | 71456 | 74641 | + | GH3 |
| TC | HRGMv2_4064_1 | HRGMv2_4064_1_76 | 75020 | 75298 | + | 2.A.98.1.4 |
| TC | HRGMv2_4064_1 | HRGMv2_4064_1_77 | 75857 | 76450 | - | 2.A.115.2.14 |
| TF | HRGMv2_4064_1 | HRGMv2_4064_1_78 | 76558 | 77415 | - | HTH_AraC |
| CAZyme | HRGMv2_4064_1 | HRGMv2_4064_1_79 | 77584 | 79959 | + | GH2 |
Gene ID: HRGMv2_4064_1_75
Type: CAZyme
Location: 71456 - 74641 (+)
Type: CAZyme
Location: 71456 - 74641 (+)
Gene ID: HRGMv2_4064_1_76
Type: TC
Location: 75020 - 75298 (+)
Type: TC
Location: 75020 - 75298 (+)
Gene ID: HRGMv2_4064_1_77
Type: TC
Location: 75857 - 76450 (-)
Type: TC
Location: 75857 - 76450 (-)
Gene ID: HRGMv2_4064_1_78
Type: TF
Location: 76558 - 77415 (-)
Type: TF
Location: 76558 - 77415 (-)
Gene ID: HRGMv2_4064_1_79
Type: CAZyme
Location: 77584 - 79959 (+)
Type: CAZyme
Location: 77584 - 79959 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp949292715
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.