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Cluster: HRGMv2_4061_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4061_2 HRGMv2_4061_2_13 15936 17999 - GH35
NULL(UNKNOWN) HRGMv2_4061_2 HRGMv2_4061_2_14 18001 19170 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_4061_2 HRGMv2_4061_2_15 19202 24559 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4061_2 HRGMv2_4061_2_16 24575 26764 - GH43
pfam HRGMv2_4061_2 HRGMv2_4061_2_17 26834 28039 - ROK
NULL(UNKNOWN) HRGMv2_4061_2 HRGMv2_4061_2_18 28660 29175 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4061_2 HRGMv2_4061_2_19 30062 31705 - 4.C.1.1.16
Gene ID: HRGMv2_4061_2_13
Type: CAZyme
Location: 15936 - 17999 (-)
Gene ID: HRGMv2_4061_2_14
Type:
Location: 18001 - 19170 (-)
Gene ID: HRGMv2_4061_2_15
Type:
Location: 19202 - 24559 (-)
Gene ID: HRGMv2_4061_2_16
Type: CAZyme
Location: 24575 - 26764 (-)
Gene ID: HRGMv2_4061_2_17
Type: pfam
Location: 26834 - 28039 (-)
Gene ID: HRGMv2_4061_2_18
Type:
Location: 28660 - 29175 (-)
Gene ID: HRGMv2_4061_2_19
Type: TC
Location: 30062 - 31705 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4061_2_14 vegetarian > omnivore 1.66090 0.02517

🧭 Explore Read Mapping of CGC

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