Cluster: HRGMv2_4055_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4055
- CGC Family ID: CGCFAM_00907
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4055_2 | HRGMv2_4055_2_22 | 26299 | 27171 | - | 3.A.1.1.48 |
| TC | HRGMv2_4055_2 | HRGMv2_4055_2_23 | 27190 | 28209 | - | 3.A.1.1.34 |
| STP | HRGMv2_4055_2 | HRGMv2_4055_2_24 | 28333 | 30093 | - | SBP_bac_1 |
| TF | HRGMv2_4055_2 | HRGMv2_4055_2_25 | 30282 | 31349 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_4055_2 | HRGMv2_4055_2_26 | 31346 | 33094 | + | 9.B.33.1.1 |
| STP | HRGMv2_4055_2 | HRGMv2_4055_2_27 | 33395 | 34279 | - | PfkB |
| NULL(UNKNOWN) | HRGMv2_4055_2 | HRGMv2_4055_2_28 | 34428 | 35768 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4055_2 | HRGMv2_4055_2_29 | 35768 | 37888 | - | GH78 |
| NULL(UNKNOWN) | HRGMv2_4055_2 | HRGMv2_4055_2_30 | 37904 | 40444 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4055_2 | HRGMv2_4055_2_31 | 40473 | 42692 | - | GH106 |
| pfam | HRGMv2_4055_2 | HRGMv2_4055_2_32 | 42737 | 43642 | - | IU_nuc_hydro |
| TC | HRGMv2_4055_2 | HRGMv2_4055_2_33 | 43664 | 44518 | - | 3.A.1.1.34 |
| TC | HRGMv2_4055_2 | HRGMv2_4055_2_34 | 44518 | 45477 | - | 3.A.1.1.34 |
Gene ID: HRGMv2_4055_2_22
Type: TC
Location: 26299 - 27171 (-)
Type: TC
Location: 26299 - 27171 (-)
Gene ID: HRGMv2_4055_2_23
Type: TC
Location: 27190 - 28209 (-)
Type: TC
Location: 27190 - 28209 (-)
Gene ID: HRGMv2_4055_2_24
Type: STP
Location: 28333 - 30093 (-)
Type: STP
Location: 28333 - 30093 (-)
Gene ID: HRGMv2_4055_2_25
Type: TF
Location: 30282 - 31349 (+)
Type: TF
Location: 30282 - 31349 (+)
Gene ID: HRGMv2_4055_2_26
Type: TC
Location: 31346 - 33094 (+)
Type: TC
Location: 31346 - 33094 (+)
Gene ID: HRGMv2_4055_2_27
Type: STP
Location: 33395 - 34279 (-)
Type: STP
Location: 33395 - 34279 (-)
Gene ID: HRGMv2_4055_2_28
Type:
Location: 34428 - 35768 (-)
Type:
Location: 34428 - 35768 (-)
Gene ID: HRGMv2_4055_2_29
Type: CAZyme
Location: 35768 - 37888 (-)
Type: CAZyme
Location: 35768 - 37888 (-)
Gene ID: HRGMv2_4055_2_30
Type:
Location: 37904 - 40444 (-)
Type:
Location: 37904 - 40444 (-)
Gene ID: HRGMv2_4055_2_31
Type: CAZyme
Location: 40473 - 42692 (-)
Type: CAZyme
Location: 40473 - 42692 (-)
Gene ID: HRGMv2_4055_2_32
Type: pfam
Location: 42737 - 43642 (-)
Type: pfam
Location: 42737 - 43642 (-)
Gene ID: HRGMv2_4055_2_33
Type: TC
Location: 43664 - 44518 (-)
Type: TC
Location: 43664 - 44518 (-)
Gene ID: HRGMv2_4055_2_34
Type: TC
Location: 44518 - 45477 (-)
Type: TC
Location: 44518 - 45477 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp944328845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.