Cluster: HRGMv2_4055_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4055
- CGC Family ID: CGCFAM_02008
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4055_1 | HRGMv2_4055_1_61 | 68211 | 69149 | + | 3.A.1.1.29 |
| TC | HRGMv2_4055_1 | HRGMv2_4055_1_62 | 69149 | 70039 | + | 3.A.1.1.29 |
| NULL(UNKNOWN) | HRGMv2_4055_1 | HRGMv2_4055_1_63 | 70111 | 71991 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4055_1 | HRGMv2_4055_1_64 | 72028 | 74268 | + | Big_3 |
| CAZyme | HRGMv2_4055_1 | HRGMv2_4055_1_65 | 74338 | 75645 | + | GH33 |
| CAZyme | HRGMv2_4055_1 | HRGMv2_4055_1_66 | 75672 | 77231 | + | GH33 |
Gene ID: HRGMv2_4055_1_61
Type: TC
Location: 68211 - 69149 (+)
Type: TC
Location: 68211 - 69149 (+)
Gene ID: HRGMv2_4055_1_62
Type: TC
Location: 69149 - 70039 (+)
Type: TC
Location: 69149 - 70039 (+)
Gene ID: HRGMv2_4055_1_63
Type:
Location: 70111 - 71991 (+)
Type:
Location: 70111 - 71991 (+)
Gene ID: HRGMv2_4055_1_64
Type: pfam
Location: 72028 - 74268 (+)
Type: pfam
Location: 72028 - 74268 (+)
Gene ID: HRGMv2_4055_1_65
Type: CAZyme
Location: 74338 - 75645 (+)
Type: CAZyme
Location: 74338 - 75645 (+)
Gene ID: HRGMv2_4055_1_66
Type: CAZyme
Location: 75672 - 77231 (+)
Type: CAZyme
Location: 75672 - 77231 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp944328845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.