Cluster: HRGMv2_4054_CGC4
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_4054
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_19 | 23505 | 24272 | - | CE4 |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_20 | 24684 | 26933 | - | GH78 |
| pfam | HRGMv2_4054_7 | HRGMv2_4054_7_21 | 27080 | 28051 | - | ROK |
| STP | HRGMv2_4054_7 | HRGMv2_4054_7_22 | 28051 | 28650 | - | SIS |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_23 | 28705 | 30972 | - | GH2 |
| pfam | HRGMv2_4054_7 | HRGMv2_4054_7_24 | 30993 | 31859 | - | Hydrolase |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_25 | 31863 | 34286 | - | GH2 |
| TF | HRGMv2_4054_7 | HRGMv2_4054_7_26 | 34367 | 35200 | + | HTH_AraC |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_27 | 35247 | 36947 | - | CE20 |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_28 | 36968 | 38488 | - | GH173 |
| NULL(UNKNOWN) | HRGMv2_4054_7 | HRGMv2_4054_7_29 | 38509 | 40218 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4054_7 | HRGMv2_4054_7_30 | 40245 | 41120 | - | 3.A.1.1.10 |
| TC | HRGMv2_4054_7 | HRGMv2_4054_7_31 | 41126 | 42124 | - | 3.A.1.1.10 |
| NULL(UNKNOWN) | HRGMv2_4054_7 | HRGMv2_4054_7_32 | 42217 | 45552 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4054_7 | HRGMv2_4054_7_33 | 45569 | 47188 | - | GH173 |
| TC | HRGMv2_4054_7 | HRGMv2_4054_7_34 | 47597 | 49261 | - | 2.A.49.5.5 |
Gene ID: HRGMv2_4054_7_19
Type: CAZyme
Location: 23505 - 24272 (-)
Type: CAZyme
Location: 23505 - 24272 (-)
Gene ID: HRGMv2_4054_7_20
Type: CAZyme
Location: 24684 - 26933 (-)
Type: CAZyme
Location: 24684 - 26933 (-)
Gene ID: HRGMv2_4054_7_21
Type: pfam
Location: 27080 - 28051 (-)
Type: pfam
Location: 27080 - 28051 (-)
Gene ID: HRGMv2_4054_7_22
Type: STP
Location: 28051 - 28650 (-)
Type: STP
Location: 28051 - 28650 (-)
Gene ID: HRGMv2_4054_7_23
Type: CAZyme
Location: 28705 - 30972 (-)
Type: CAZyme
Location: 28705 - 30972 (-)
Gene ID: HRGMv2_4054_7_24
Type: pfam
Location: 30993 - 31859 (-)
Type: pfam
Location: 30993 - 31859 (-)
Gene ID: HRGMv2_4054_7_25
Type: CAZyme
Location: 31863 - 34286 (-)
Type: CAZyme
Location: 31863 - 34286 (-)
Gene ID: HRGMv2_4054_7_26
Type: TF
Location: 34367 - 35200 (+)
Type: TF
Location: 34367 - 35200 (+)
Gene ID: HRGMv2_4054_7_27
Type: CAZyme
Location: 35247 - 36947 (-)
Type: CAZyme
Location: 35247 - 36947 (-)
Gene ID: HRGMv2_4054_7_28
Type: CAZyme
Location: 36968 - 38488 (-)
Type: CAZyme
Location: 36968 - 38488 (-)
Gene ID: HRGMv2_4054_7_29
Type:
Location: 38509 - 40218 (-)
Type:
Location: 38509 - 40218 (-)
Gene ID: HRGMv2_4054_7_30
Type: TC
Location: 40245 - 41120 (-)
Type: TC
Location: 40245 - 41120 (-)
Gene ID: HRGMv2_4054_7_31
Type: TC
Location: 41126 - 42124 (-)
Type: TC
Location: 41126 - 42124 (-)
Gene ID: HRGMv2_4054_7_32
Type:
Location: 42217 - 45552 (-)
Type:
Location: 42217 - 45552 (-)
Gene ID: HRGMv2_4054_7_33
Type: CAZyme
Location: 45569 - 47188 (-)
Type: CAZyme
Location: 45569 - 47188 (-)
Gene ID: HRGMv2_4054_7_34
Type: TC
Location: 47597 - 49261 (-)
Type: TC
Location: 47597 - 49261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Borkfalkiaceae
Genus
Borkfalkia
Species
Borkfalkia sp017886545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.