Cluster: HRGMv2_4043_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4043
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4043_18 | HRGMv2_4043_18_14 | 14735 | 16075 | + | 9.A.40.2.2 |
| pfam | HRGMv2_4043_18 | HRGMv2_4043_18_15 | 16092 | 17615 | + | Glycos_transf_2 |
| CAZyme | HRGMv2_4043_18 | HRGMv2_4043_18_16 | 17612 | 18529 | + | GT111 |
| STP | HRGMv2_4043_18 | HRGMv2_4043_18_17 | 19172 | 20545 | + | TrkA_C | TrkA_C |
| TC | HRGMv2_4043_18 | HRGMv2_4043_18_18 | 20542 | 22101 | + | 2.A.38.1.1 |
Gene ID: HRGMv2_4043_18_14
Type: TC
Location: 14735 - 16075 (+)
Type: TC
Location: 14735 - 16075 (+)
Gene ID: HRGMv2_4043_18_15
Type: pfam
Location: 16092 - 17615 (+)
Type: pfam
Location: 16092 - 17615 (+)
Gene ID: HRGMv2_4043_18_16
Type: CAZyme
Location: 17612 - 18529 (+)
Type: CAZyme
Location: 17612 - 18529 (+)
Gene ID: HRGMv2_4043_18_17
Type: STP
Location: 19172 - 20545 (+)
Type: STP
Location: 19172 - 20545 (+)
Gene ID: HRGMv2_4043_18_18
Type: TC
Location: 20542 - 22101 (+)
Type: TC
Location: 20542 - 22101 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp900761765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.