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Cluster: HRGMv2_4043_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4043_13 HRGMv2_4043_13_16 26229 26972 + 3.A.1.6.7
pfam HRGMv2_4043_13 HRGMv2_4043_13_17 26965 27882 + SUFBD_core
peptidase HRGMv2_4043_13 HRGMv2_4043_13_18 28084 29025 + S09.UPC
CAZyme HRGMv2_4043_13 HRGMv2_4043_13_19 29046 30497 + GH43_35
TF HRGMv2_4043_13 HRGMv2_4043_13_20 30565 31272 + LytTR
pfam HRGMv2_4043_13 HRGMv2_4043_13_21 31269 32555 + HATPase_c_5
CAZyme HRGMv2_4043_13 HRGMv2_4043_13_22 32779 36903 + GH3
TC HRGMv2_4043_13 HRGMv2_4043_13_23 37035 39071 + 1.C.39.4.6
NULL(UNKNOWN) HRGMv2_4043_13 HRGMv2_4043_13_24 39091 39561 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4043_13 HRGMv2_4043_13_25 39566 42559 + GH3
Gene ID: HRGMv2_4043_13_16
Type: TC
Location: 26229 - 26972 (+)
Gene ID: HRGMv2_4043_13_17
Type: pfam
Location: 26965 - 27882 (+)
Gene ID: HRGMv2_4043_13_18
Type: peptidase
Location: 28084 - 29025 (+)
Gene ID: HRGMv2_4043_13_19
Type: CAZyme
Location: 29046 - 30497 (+)
Gene ID: HRGMv2_4043_13_20
Type: TF
Location: 30565 - 31272 (+)
Gene ID: HRGMv2_4043_13_21
Type: pfam
Location: 31269 - 32555 (+)
Gene ID: HRGMv2_4043_13_22
Type: CAZyme
Location: 32779 - 36903 (+)
Gene ID: HRGMv2_4043_13_23
Type: TC
Location: 37035 - 39071 (+)
Gene ID: HRGMv2_4043_13_24
Type:
Location: 39091 - 39561 (+)
Gene ID: HRGMv2_4043_13_25
Type: CAZyme
Location: 39566 - 42559 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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