Cluster: HRGMv2_4043_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4043
- CGC Family ID: CGCFAM_05441
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4043_9 | HRGMv2_4043_9_33 | 50153 | 52546 | + | CBM67 | GH78 |
| CAZyme | HRGMv2_4043_9 | HRGMv2_4043_9_34 | 52559 | 55570 | + | GH3 |
| CAZyme | HRGMv2_4043_9 | HRGMv2_4043_9_35 | 55602 | 58613 | + | GH3 |
| TF | HRGMv2_4043_9 | HRGMv2_4043_9_36 | 58813 | 59157 | + | HTH_5 |
| STP | HRGMv2_4043_9 | HRGMv2_4043_9_37 | 59283 | 59501 | + | HMA |
| TC | HRGMv2_4043_9 | HRGMv2_4043_9_38 | 59515 | 61470 | + | 3.A.3.6.10 |
Gene ID: HRGMv2_4043_9_33
Type: CAZyme
Location: 50153 - 52546 (+)
Type: CAZyme
Location: 50153 - 52546 (+)
Gene ID: HRGMv2_4043_9_34
Type: CAZyme
Location: 52559 - 55570 (+)
Type: CAZyme
Location: 52559 - 55570 (+)
Gene ID: HRGMv2_4043_9_35
Type: CAZyme
Location: 55602 - 58613 (+)
Type: CAZyme
Location: 55602 - 58613 (+)
Gene ID: HRGMv2_4043_9_36
Type: TF
Location: 58813 - 59157 (+)
Type: TF
Location: 58813 - 59157 (+)
Gene ID: HRGMv2_4043_9_37
Type: STP
Location: 59283 - 59501 (+)
Type: STP
Location: 59283 - 59501 (+)
Gene ID: HRGMv2_4043_9_38
Type: TC
Location: 59515 - 61470 (+)
Type: TC
Location: 59515 - 61470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp900761765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.