Cluster: HRGMv2_4043_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4043
- CGC Family ID: CGCFAM_00233
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4043_9 | HRGMv2_4043_9_10 | 11562 | 12704 | + | 2.A.21.9.2 |
| TF | HRGMv2_4043_9 | HRGMv2_4043_9_11 | 12814 | 13521 | + | LytTR |
| pfam | HRGMv2_4043_9 | HRGMv2_4043_9_12 | 13523 | 14854 | + | HATPase_c_5 |
| CAZyme | HRGMv2_4043_9 | HRGMv2_4043_9_13 | 14954 | 17959 | + | GH3 |
| TF | HRGMv2_4043_9 | HRGMv2_4043_9_14 | 18133 | 18840 | + | LytTR |
| pfam | HRGMv2_4043_9 | HRGMv2_4043_9_15 | 18842 | 20194 | + | HATPase_c | HATPase_c_5 |
| CAZyme | HRGMv2_4043_9 | HRGMv2_4043_9_16 | 20349 | 23504 | + | GH3 |
Gene ID: HRGMv2_4043_9_10
Type: TC
Location: 11562 - 12704 (+)
Type: TC
Location: 11562 - 12704 (+)
Gene ID: HRGMv2_4043_9_11
Type: TF
Location: 12814 - 13521 (+)
Type: TF
Location: 12814 - 13521 (+)
Gene ID: HRGMv2_4043_9_12
Type: pfam
Location: 13523 - 14854 (+)
Type: pfam
Location: 13523 - 14854 (+)
Gene ID: HRGMv2_4043_9_13
Type: CAZyme
Location: 14954 - 17959 (+)
Type: CAZyme
Location: 14954 - 17959 (+)
Gene ID: HRGMv2_4043_9_14
Type: TF
Location: 18133 - 18840 (+)
Type: TF
Location: 18133 - 18840 (+)
Gene ID: HRGMv2_4043_9_15
Type: pfam
Location: 18842 - 20194 (+)
Type: pfam
Location: 18842 - 20194 (+)
Gene ID: HRGMv2_4043_9_16
Type: CAZyme
Location: 20349 - 23504 (+)
Type: CAZyme
Location: 20349 - 23504 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp900761765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.