Cluster: HRGMv2_4043_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4043
- CGC Family ID: CGCFAM_00268
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4043_1 | HRGMv2_4043_1_7 | 6220 | 6816 | - | 4.F.1.1.7 |
| pfam | HRGMv2_4043_1 | HRGMv2_4043_1_8 | 6813 | 8123 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_4043_1 | HRGMv2_4043_1_9 | 8116 | 11661 | - | 3.A.12.1.1 |
| peptidase | HRGMv2_4043_1 | HRGMv2_4043_1_10 | 11808 | 13073 | - | M16.UPB |
| CAZyme | HRGMv2_4043_1 | HRGMv2_4043_1_11 | 13127 | 13834 | - | CE4 |
Gene ID: HRGMv2_4043_1_7
Type: TC
Location: 6220 - 6816 (-)
Type: TC
Location: 6220 - 6816 (-)
Gene ID: HRGMv2_4043_1_8
Type: pfam
Location: 6813 - 8123 (-)
Type: pfam
Location: 6813 - 8123 (-)
Gene ID: HRGMv2_4043_1_9
Type: TC
Location: 8116 - 11661 (-)
Type: TC
Location: 8116 - 11661 (-)
Gene ID: HRGMv2_4043_1_10
Type: peptidase
Location: 11808 - 13073 (-)
Type: peptidase
Location: 11808 - 13073 (-)
Gene ID: HRGMv2_4043_1_11
Type: CAZyme
Location: 13127 - 13834 (-)
Type: CAZyme
Location: 13127 - 13834 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Pumilibacteraceae
Genus
Protoclostridium
Species
Protoclostridium sp900761765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.