Cluster: HRGMv2_4009_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4009
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_52 | 64353 | 66317 | - | 1.B.6.1.14 |
| NULL(UNKNOWN) | HRGMv2_4009_1 | HRGMv2_4009_1_53 | 66466 | 67260 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_54 | 67658 | 69007 | + | 2.A.49.5.3 |
| pfam | HRGMv2_4009_1 | HRGMv2_4009_1_55 | 69075 | 69230 | - | Ribosomal_L34 |
| CAZyme | HRGMv2_4009_1 | HRGMv2_4009_1_56 | 69342 | 70913 | + | GH43_35 |
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_57 | 72142 | 75372 | + | 1.B.14.6.1 |
| pfam | HRGMv2_4009_1 | HRGMv2_4009_1_58 | 75400 | 77475 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_4009_1 | HRGMv2_4009_1_59 | 77597 | 78562 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4009_1 | HRGMv2_4009_1_60 | 78675 | 82262 | + | PL1_2 |
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_61 | 82451 | 83920 | + | 2.A.1.53.5 |
| pfam | HRGMv2_4009_1 | HRGMv2_4009_1_62 | 84041 | 86062 | + | BRCT | HHH | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | HHH_5 | Nlig-Ia |
| pfam | HRGMv2_4009_1 | HRGMv2_4009_1_63 | 86163 | 86813 | + | LysE |
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_64 | 87063 | 87761 | + | 1.A.8.3.1 |
Gene ID: HRGMv2_4009_1_52
Type: TC
Location: 64353 - 66317 (-)
Type: TC
Location: 64353 - 66317 (-)
Gene ID: HRGMv2_4009_1_53
Type:
Location: 66466 - 67260 (-)
Type:
Location: 66466 - 67260 (-)
Gene ID: HRGMv2_4009_1_54
Type: TC
Location: 67658 - 69007 (+)
Type: TC
Location: 67658 - 69007 (+)
Gene ID: HRGMv2_4009_1_55
Type: pfam
Location: 69075 - 69230 (-)
Type: pfam
Location: 69075 - 69230 (-)
Gene ID: HRGMv2_4009_1_56
Type: CAZyme
Location: 69342 - 70913 (+)
Type: CAZyme
Location: 69342 - 70913 (+)
Gene ID: HRGMv2_4009_1_57
Type: TC
Location: 72142 - 75372 (+)
Type: TC
Location: 72142 - 75372 (+)
Gene ID: HRGMv2_4009_1_58
Type: pfam
Location: 75400 - 77475 (+)
Type: pfam
Location: 75400 - 77475 (+)
Gene ID: HRGMv2_4009_1_59
Type:
Location: 77597 - 78562 (+)
Type:
Location: 77597 - 78562 (+)
Gene ID: HRGMv2_4009_1_60
Type: CAZyme
Location: 78675 - 82262 (+)
Type: CAZyme
Location: 78675 - 82262 (+)
Gene ID: HRGMv2_4009_1_61
Type: TC
Location: 82451 - 83920 (+)
Type: TC
Location: 82451 - 83920 (+)
Gene ID: HRGMv2_4009_1_62
Type: pfam
Location: 84041 - 86062 (+)
Type: pfam
Location: 84041 - 86062 (+)
Gene ID: HRGMv2_4009_1_63
Type: pfam
Location: 86163 - 86813 (+)
Type: pfam
Location: 86163 - 86813 (+)
Gene ID: HRGMv2_4009_1_64
Type: TC
Location: 87063 - 87761 (+)
Type: TC
Location: 87063 - 87761 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.