Cluster: HRGMv2_4009_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4009
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4009_15 | HRGMv2_4009_15_14 | 14174 | 15331 | - | 3.B.1.1.2 |
| pfam | HRGMv2_4009_15 | HRGMv2_4009_15_15 | 15372 | 15806 | - | Biotin_lipoyl | Biotin_lipoyl_2 |
| pfam | HRGMv2_4009_15 | HRGMv2_4009_15_16 | 15867 | 16799 | - | LTD | OAD_gamma |
| TC | HRGMv2_4009_15 | HRGMv2_4009_15_17 | 16824 | 18377 | - | 3.B.1.1.2 |
| STP | HRGMv2_4009_15 | HRGMv2_4009_15_18 | 18449 | 18874 | - | Glyoxalase |
| peptidase | HRGMv2_4009_15 | HRGMv2_4009_15_19 | 19176 | 22025 | - | M16.UPB |
| CAZyme | HRGMv2_4009_15 | HRGMv2_4009_15_20 | 22152 | 24545 | - | PL1 |
| NULL(UNKNOWN) | HRGMv2_4009_15 | HRGMv2_4009_15_21 | 24558 | 24932 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4009_15 | HRGMv2_4009_15_22 | 24969 | 25406 | - | 1.A.22.1.1 |
| pfam | HRGMv2_4009_15 | HRGMv2_4009_15_23 | 25726 | 26733 | + | Gp_dh_N | Gp_dh_C |
| CAZyme | HRGMv2_4009_15 | HRGMv2_4009_15_24 | 27374 | 29935 | - | GT35 |
| CAZyme | HRGMv2_4009_15 | HRGMv2_4009_15_25 | 29984 | 31660 | - | GT3 |
Gene ID: HRGMv2_4009_15_14
Type: TC
Location: 14174 - 15331 (-)
Type: TC
Location: 14174 - 15331 (-)
Gene ID: HRGMv2_4009_15_15
Type: pfam
Location: 15372 - 15806 (-)
Type: pfam
Location: 15372 - 15806 (-)
Gene ID: HRGMv2_4009_15_16
Type: pfam
Location: 15867 - 16799 (-)
Type: pfam
Location: 15867 - 16799 (-)
Gene ID: HRGMv2_4009_15_17
Type: TC
Location: 16824 - 18377 (-)
Type: TC
Location: 16824 - 18377 (-)
Gene ID: HRGMv2_4009_15_18
Type: STP
Location: 18449 - 18874 (-)
Type: STP
Location: 18449 - 18874 (-)
Gene ID: HRGMv2_4009_15_19
Type: peptidase
Location: 19176 - 22025 (-)
Type: peptidase
Location: 19176 - 22025 (-)
Gene ID: HRGMv2_4009_15_20
Type: CAZyme
Location: 22152 - 24545 (-)
Type: CAZyme
Location: 22152 - 24545 (-)
Gene ID: HRGMv2_4009_15_21
Type:
Location: 24558 - 24932 (-)
Type:
Location: 24558 - 24932 (-)
Gene ID: HRGMv2_4009_15_22
Type: TC
Location: 24969 - 25406 (-)
Type: TC
Location: 24969 - 25406 (-)
Gene ID: HRGMv2_4009_15_23
Type: pfam
Location: 25726 - 26733 (+)
Type: pfam
Location: 25726 - 26733 (+)
Gene ID: HRGMv2_4009_15_24
Type: CAZyme
Location: 27374 - 29935 (-)
Type: CAZyme
Location: 27374 - 29935 (-)
Gene ID: HRGMv2_4009_15_25
Type: CAZyme
Location: 29984 - 31660 (-)
Type: CAZyme
Location: 29984 - 31660 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.