Cluster: HRGMv2_4009_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_4009
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_25 | 30495 | 33647 | + | 1.B.14.6.1 |
| pfam | HRGMv2_4009_1 | HRGMv2_4009_1_26 | 33684 | 35201 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_4009_1 | HRGMv2_4009_1_27 | 35205 | 36605 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4009_1 | HRGMv2_4009_1_28 | 36642 | 37754 | + | GH16_3 |
| CAZyme | HRGMv2_4009_1 | HRGMv2_4009_1_29 | 37952 | 39217 | + | GH5_46 |
| CAZyme | HRGMv2_4009_1 | HRGMv2_4009_1_30 | 39232 | 41454 | + | GH3 |
| TC | HRGMv2_4009_1 | HRGMv2_4009_1_31 | 41553 | 41945 | - | 1.A.43.1.6 |
Gene ID: HRGMv2_4009_1_25
Type: TC
Location: 30495 - 33647 (+)
Type: TC
Location: 30495 - 33647 (+)
Gene ID: HRGMv2_4009_1_26
Type: pfam
Location: 33684 - 35201 (+)
Type: pfam
Location: 33684 - 35201 (+)
Gene ID: HRGMv2_4009_1_27
Type:
Location: 35205 - 36605 (+)
Type:
Location: 35205 - 36605 (+)
Gene ID: HRGMv2_4009_1_28
Type: CAZyme
Location: 36642 - 37754 (+)
Type: CAZyme
Location: 36642 - 37754 (+)
Gene ID: HRGMv2_4009_1_29
Type: CAZyme
Location: 37952 - 39217 (+)
Type: CAZyme
Location: 37952 - 39217 (+)
Gene ID: HRGMv2_4009_1_30
Type: CAZyme
Location: 39232 - 41454 (+)
Type: CAZyme
Location: 39232 - 41454 (+)
Gene ID: HRGMv2_4009_1_31
Type: TC
Location: 41553 - 41945 (-)
Type: TC
Location: 41553 - 41945 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Duncaniella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.