Cluster: HRGMv2_4008_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 5
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_4008
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4008_1 | HRGMv2_4008_1_124 | 162314 | 164572 | + | GH92 |
| sulfatase | HRGMv2_4008_1 | HRGMv2_4008_1_125 | 164597 | 167113 | + | S1_4 |
| CAZyme | HRGMv2_4008_1 | HRGMv2_4008_1_126 | 167122 | 169425 | + | GH92 |
| CAZyme | HRGMv2_4008_1 | HRGMv2_4008_1_127 | 170059 | 171954 | - | GH20 |
| CAZyme | HRGMv2_4008_1 | HRGMv2_4008_1_128 | 172107 | 173513 | - | GH39 |
| CAZyme | HRGMv2_4008_1 | HRGMv2_4008_1_129 | 173526 | 174761 | - | GH27 |
| pfam | HRGMv2_4008_1 | HRGMv2_4008_1_130 | 174929 | 176590 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_4008_1 | HRGMv2_4008_1_131 | 176603 | 180049 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_4008_1_124
Type: CAZyme
Location: 162314 - 164572 (+)
Type: CAZyme
Location: 162314 - 164572 (+)
Gene ID: HRGMv2_4008_1_125
Type: sulfatase
Location: 164597 - 167113 (+)
Type: sulfatase
Location: 164597 - 167113 (+)
Gene ID: HRGMv2_4008_1_126
Type: CAZyme
Location: 167122 - 169425 (+)
Type: CAZyme
Location: 167122 - 169425 (+)
Gene ID: HRGMv2_4008_1_127
Type: CAZyme
Location: 170059 - 171954 (-)
Type: CAZyme
Location: 170059 - 171954 (-)
Gene ID: HRGMv2_4008_1_128
Type: CAZyme
Location: 172107 - 173513 (-)
Type: CAZyme
Location: 172107 - 173513 (-)
Gene ID: HRGMv2_4008_1_129
Type: CAZyme
Location: 173526 - 174761 (-)
Type: CAZyme
Location: 173526 - 174761 (-)
Gene ID: HRGMv2_4008_1_130
Type: pfam
Location: 174929 - 176590 (-)
Type: pfam
Location: 174929 - 176590 (-)
Gene ID: HRGMv2_4008_1_131
Type: TC
Location: 176603 - 180049 (-)
Type: TC
Location: 176603 - 180049 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.