Cluster: HRGMv2_4008_CGC38
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4008
- CGC Family ID: CGCFAM_00181
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4008_28 | HRGMv2_4008_28_25 | 24909 | 25880 | - | GT2 |
| CAZyme | HRGMv2_4008_28 | HRGMv2_4008_28_26 | 25844 | 26722 | - | GT2 |
| pfam | HRGMv2_4008_28 | HRGMv2_4008_28_27 | 26802 | 28289 | + | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | HRGMv2_4008_28 | HRGMv2_4008_28_28 | 28286 | 29281 | + | GT2 |
| TC | HRGMv2_4008_28 | HRGMv2_4008_28_29 | 29497 | 30846 | + | 2.A.62.1.3 |
| pfam | HRGMv2_4008_28 | HRGMv2_4008_28_30 | 30862 | 31839 | + | PFK |
| TC | HRGMv2_4008_28 | HRGMv2_4008_28_31 | 31944 | 33470 | + | 3.A.2.1.2 |
Gene ID: HRGMv2_4008_28_25
Type: CAZyme
Location: 24909 - 25880 (-)
Type: CAZyme
Location: 24909 - 25880 (-)
Gene ID: HRGMv2_4008_28_26
Type: CAZyme
Location: 25844 - 26722 (-)
Type: CAZyme
Location: 25844 - 26722 (-)
Gene ID: HRGMv2_4008_28_27
Type: pfam
Location: 26802 - 28289 (+)
Type: pfam
Location: 26802 - 28289 (+)
Gene ID: HRGMv2_4008_28_28
Type: CAZyme
Location: 28286 - 29281 (+)
Type: CAZyme
Location: 28286 - 29281 (+)
Gene ID: HRGMv2_4008_28_29
Type: TC
Location: 29497 - 30846 (+)
Type: TC
Location: 29497 - 30846 (+)
Gene ID: HRGMv2_4008_28_30
Type: pfam
Location: 30862 - 31839 (+)
Type: pfam
Location: 30862 - 31839 (+)
Gene ID: HRGMv2_4008_28_31
Type: TC
Location: 31944 - 33470 (+)
Type: TC
Location: 31944 - 33470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.