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Cluster: HRGMv2_4008_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4008_24 HRGMv2_4008_24_15 19366 20067 + 9.B.186.1.3
CAZyme HRGMv2_4008_24 HRGMv2_4008_24_16 20148 20876 + GT51
pfam HRGMv2_4008_24 HRGMv2_4008_24_17 20884 23325 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2 | PcrA_UvrD_tudor
pfam HRGMv2_4008_24 HRGMv2_4008_24_18 23502 24914 - DUF4270
CAZyme HRGMv2_4008_24 HRGMv2_4008_24_19 24947 25756 - GT5
pfam HRGMv2_4008_24 HRGMv2_4008_24_20 25894 26322 - Biotin_lipoyl
NULL(UNKNOWN) HRGMv2_4008_24 HRGMv2_4008_24_21 26329 26478 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4008_24 HRGMv2_4008_24_22 26508 28073 - 3.B.1.1.2
Gene ID: HRGMv2_4008_24_15
Type: TC
Location: 19366 - 20067 (+)
Gene ID: HRGMv2_4008_24_16
Type: CAZyme
Location: 20148 - 20876 (+)
Gene ID: HRGMv2_4008_24_17
Type: pfam
Location: 20884 - 23325 (+)
Gene ID: HRGMv2_4008_24_18
Type: pfam
Location: 23502 - 24914 (-)
Gene ID: HRGMv2_4008_24_19
Type: CAZyme
Location: 24947 - 25756 (-)
Gene ID: HRGMv2_4008_24_20
Type: pfam
Location: 25894 - 26322 (-)
Gene ID: HRGMv2_4008_24_21
Type:
Location: 26329 - 26478 (-)
Gene ID: HRGMv2_4008_24_22
Type: TC
Location: 26508 - 28073 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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