Cluster: HRGMv2_4008_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4008
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4008_21 | HRGMv2_4008_21_29 | 36429 | 37847 | + | GH29 |
| TC | HRGMv2_4008_21 | HRGMv2_4008_21_30 | 37887 | 38465 | - | 2.A.107.1.1 |
| NULL(UNKNOWN) | HRGMv2_4008_21 | HRGMv2_4008_21_31 | 38652 | 39086 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4008_21 | HRGMv2_4008_21_32 | 39205 | 40275 | - | CBM9 |
| pfam | HRGMv2_4008_21 | HRGMv2_4008_21_33 | 40344 | 40850 | + | LMWPc |
| NULL(UNKNOWN) | HRGMv2_4008_21 | HRGMv2_4008_21_34 | 41090 | 41308 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4008_21 | HRGMv2_4008_21_35 | 41364 | 42707 | + | GH28 |
Gene ID: HRGMv2_4008_21_29
Type: CAZyme
Location: 36429 - 37847 (+)
Type: CAZyme
Location: 36429 - 37847 (+)
Gene ID: HRGMv2_4008_21_30
Type: TC
Location: 37887 - 38465 (-)
Type: TC
Location: 37887 - 38465 (-)
Gene ID: HRGMv2_4008_21_31
Type:
Location: 38652 - 39086 (+)
Type:
Location: 38652 - 39086 (+)
Gene ID: HRGMv2_4008_21_32
Type: CAZyme
Location: 39205 - 40275 (-)
Type: CAZyme
Location: 39205 - 40275 (-)
Gene ID: HRGMv2_4008_21_33
Type: pfam
Location: 40344 - 40850 (+)
Type: pfam
Location: 40344 - 40850 (+)
Gene ID: HRGMv2_4008_21_34
Type:
Location: 41090 - 41308 (-)
Type:
Location: 41090 - 41308 (-)
Gene ID: HRGMv2_4008_21_35
Type: CAZyme
Location: 41364 - 42707 (+)
Type: CAZyme
Location: 41364 - 42707 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.