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Cluster: HRGMv2_4008_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4008_12 HRGMv2_4008_12_12 7322 8629 - 2.A.2.6.2
TF HRGMv2_4008_12 HRGMv2_4008_12_13 8702 9730 - LacI
TC HRGMv2_4008_12 HRGMv2_4008_12_14 10037 13048 + 1.B.14.6.1
TC HRGMv2_4008_12 HRGMv2_4008_12_15 13068 14738 + 8.A.46.1.1
pfam HRGMv2_4008_12 HRGMv2_4008_12_16 14785 16011 + SusE | SusF_SusE
pfam HRGMv2_4008_12 HRGMv2_4008_12_17 16028 17506 + SusF_N
CAZyme HRGMv2_4008_12 HRGMv2_4008_12_18 17865 19625 + GH13_6
CAZyme HRGMv2_4008_12 HRGMv2_4008_12_19 19753 21012 + GH53
Gene ID: HRGMv2_4008_12_12
Type: TC
Location: 7322 - 8629 (-)
Gene ID: HRGMv2_4008_12_13
Type: TF
Location: 8702 - 9730 (-)
Gene ID: HRGMv2_4008_12_14
Type: TC
Location: 10037 - 13048 (+)
Gene ID: HRGMv2_4008_12_15
Type: TC
Location: 13068 - 14738 (+)
Gene ID: HRGMv2_4008_12_16
Type: pfam
Location: 14785 - 16011 (+)
Gene ID: HRGMv2_4008_12_17
Type: pfam
Location: 16028 - 17506 (+)
Gene ID: HRGMv2_4008_12_18
Type: CAZyme
Location: 17865 - 19625 (+)
Gene ID: HRGMv2_4008_12_19
Type: CAZyme
Location: 19753 - 21012 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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