Cluster: HRGMv2_4008_CGC20
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4008
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_10 | 10913 | 12577 | - | 9.B.174.1.1 |
| NULL(UNKNOWN) | HRGMv2_4008_11 | HRGMv2_4008_11_11 | 13263 | 14024 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_4008_11 | HRGMv2_4008_11_12 | 14053 | 15726 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_13 | 15748 | 19029 | - | 1.B.14.6.2 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_14 | 19713 | 21353 | - | 8.A.46.2.2 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_15 | 21369 | 24701 | - | 1.B.14.6.2 |
| CAZyme | HRGMv2_4008_11 | HRGMv2_4008_11_16 | 25344 | 26642 | - | GH29 |
| pfam | HRGMv2_4008_11 | HRGMv2_4008_11_17 | 26827 | 27765 | - | BT_3987-like_N |
| pfam | HRGMv2_4008_11 | HRGMv2_4008_11_18 | 27821 | 29038 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | HRGMv2_4008_11 | HRGMv2_4008_11_19 | 29057 | 30079 | - | GH18 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_20 | 30109 | 31707 | - | 8.A.46.2.2 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_21 | 31729 | 34287 | - | 1.B.14.6.13 |
| TC | HRGMv2_4008_11 | HRGMv2_4008_11_22 | 34324 | 34839 | - | 1.B.14.6.2 |
| peptidase | HRGMv2_4008_11 | HRGMv2_4008_11_23 | 35436 | 38171 | + | S09.UPW |
| CAZyme | HRGMv2_4008_11 | HRGMv2_4008_11_24 | 38317 | 40548 | + | GH3 |
Gene ID: HRGMv2_4008_11_10
Type: TC
Location: 10913 - 12577 (-)
Type: TC
Location: 10913 - 12577 (-)
Gene ID: HRGMv2_4008_11_11
Type:
Location: 13263 - 14024 (-)
Type:
Location: 13263 - 14024 (-)
Gene ID: HRGMv2_4008_11_12
Type: pfam
Location: 14053 - 15726 (-)
Type: pfam
Location: 14053 - 15726 (-)
Gene ID: HRGMv2_4008_11_13
Type: TC
Location: 15748 - 19029 (-)
Type: TC
Location: 15748 - 19029 (-)
Gene ID: HRGMv2_4008_11_14
Type: TC
Location: 19713 - 21353 (-)
Type: TC
Location: 19713 - 21353 (-)
Gene ID: HRGMv2_4008_11_15
Type: TC
Location: 21369 - 24701 (-)
Type: TC
Location: 21369 - 24701 (-)
Gene ID: HRGMv2_4008_11_16
Type: CAZyme
Location: 25344 - 26642 (-)
Type: CAZyme
Location: 25344 - 26642 (-)
Gene ID: HRGMv2_4008_11_17
Type: pfam
Location: 26827 - 27765 (-)
Type: pfam
Location: 26827 - 27765 (-)
Gene ID: HRGMv2_4008_11_18
Type: pfam
Location: 27821 - 29038 (-)
Type: pfam
Location: 27821 - 29038 (-)
Gene ID: HRGMv2_4008_11_19
Type: CAZyme
Location: 29057 - 30079 (-)
Type: CAZyme
Location: 29057 - 30079 (-)
Gene ID: HRGMv2_4008_11_20
Type: TC
Location: 30109 - 31707 (-)
Type: TC
Location: 30109 - 31707 (-)
Gene ID: HRGMv2_4008_11_21
Type: TC
Location: 31729 - 34287 (-)
Type: TC
Location: 31729 - 34287 (-)
Gene ID: HRGMv2_4008_11_22
Type: TC
Location: 34324 - 34839 (-)
Type: TC
Location: 34324 - 34839 (-)
Gene ID: HRGMv2_4008_11_23
Type: peptidase
Location: 35436 - 38171 (+)
Type: peptidase
Location: 35436 - 38171 (+)
Gene ID: HRGMv2_4008_11_24
Type: CAZyme
Location: 38317 - 40548 (+)
Type: CAZyme
Location: 38317 - 40548 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.