Cluster: HRGMv2_4007_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4007
- CGC Family ID: CGCFAM_02145
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4007_20 | HRGMv2_4007_20_20 | 24371 | 25531 | + | GH53 |
| TC | HRGMv2_4007_20 | HRGMv2_4007_20_21 | 25705 | 28560 | + | 3.A.3.2.17 |
| TC | HRGMv2_4007_20 | HRGMv2_4007_20_22 | 28652 | 30367 | - | 2.A.81.1.2 |
| CAZyme | HRGMv2_4007_20 | HRGMv2_4007_20_23 | 30413 | 31252 | + | GH25 |
| NULL(UNKNOWN) | HRGMv2_4007_20 | HRGMv2_4007_20_24 | 31287 | 32393 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_4007_20 | HRGMv2_4007_20_25 | 32437 | 33621 | - | GT19 |
| pfam | HRGMv2_4007_20 | HRGMv2_4007_20_26 | 33626 | 34483 | - | SurE |
| pfam | HRGMv2_4007_20 | HRGMv2_4007_20_27 | 34637 | 35635 | + | Gp_dh_N | Gp_dh_C |
| TC | HRGMv2_4007_20 | HRGMv2_4007_20_28 | 35706 | 36386 | + | 9.B.186.1.3 |
| pfam | HRGMv2_4007_20 | HRGMv2_4007_20_29 | 36496 | 38091 | - | AAA_19 | UvrD_C_2 | AAA_30 |
| TC | HRGMv2_4007_20 | HRGMv2_4007_20_30 | 38101 | 39555 | - | 2.A.38.1.3 |
Gene ID: HRGMv2_4007_20_20
Type: CAZyme
Location: 24371 - 25531 (+)
Type: CAZyme
Location: 24371 - 25531 (+)
Gene ID: HRGMv2_4007_20_21
Type: TC
Location: 25705 - 28560 (+)
Type: TC
Location: 25705 - 28560 (+)
Gene ID: HRGMv2_4007_20_22
Type: TC
Location: 28652 - 30367 (-)
Type: TC
Location: 28652 - 30367 (-)
Gene ID: HRGMv2_4007_20_23
Type: CAZyme
Location: 30413 - 31252 (+)
Type: CAZyme
Location: 30413 - 31252 (+)
Gene ID: HRGMv2_4007_20_24
Type:
Location: 31287 - 32393 (-)
Type:
Location: 31287 - 32393 (-)
Gene ID: HRGMv2_4007_20_25
Type: CAZyme
Location: 32437 - 33621 (-)
Type: CAZyme
Location: 32437 - 33621 (-)
Gene ID: HRGMv2_4007_20_26
Type: pfam
Location: 33626 - 34483 (-)
Type: pfam
Location: 33626 - 34483 (-)
Gene ID: HRGMv2_4007_20_27
Type: pfam
Location: 34637 - 35635 (+)
Type: pfam
Location: 34637 - 35635 (+)
Gene ID: HRGMv2_4007_20_28
Type: TC
Location: 35706 - 36386 (+)
Type: TC
Location: 35706 - 36386 (+)
Gene ID: HRGMv2_4007_20_29
Type: pfam
Location: 36496 - 38091 (-)
Type: pfam
Location: 36496 - 38091 (-)
Gene ID: HRGMv2_4007_20_30
Type: TC
Location: 38101 - 39555 (-)
Type: TC
Location: 38101 - 39555 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Cryptobacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.