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Cluster: HRGMv2_4005_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4005_1 HRGMv2_4005_1_7 7657 8592 + CBM50
NULL(UNKNOWN) HRGMv2_4005_1 HRGMv2_4005_1_8 8589 8723 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4005_1 HRGMv2_4005_1_9 9033 10730 + GH110
CAZyme HRGMv2_4005_1 HRGMv2_4005_1_10 10935 12212 + GT4
CAZyme HRGMv2_4005_1 HRGMv2_4005_1_11 12209 12985 + GT2
pfam HRGMv2_4005_1 HRGMv2_4005_1_12 13077 14474 + Metallophos | MetallophosC | MetallophosN
pfam HRGMv2_4005_1 HRGMv2_4005_1_13 14840 15730 + NAD_kinase | NAD_kinase_C
TC HRGMv2_4005_1 HRGMv2_4005_1_14 15780 17447 + 3.A.1.117.3
sulfatase HRGMv2_4005_1 HRGMv2_4005_1_15 17494 18501 + S1_17
NULL(UNKNOWN) HRGMv2_4005_1 HRGMv2_4005_1_16 18521 18784 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_4005_1 HRGMv2_4005_1_17 18806 19774 + GH43_19
pfam HRGMv2_4005_1 HRGMv2_4005_1_18 19891 21309 + Virulence_RhuM
NULL(UNKNOWN) HRGMv2_4005_1 HRGMv2_4005_1_19 21713 23527 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4005_1 HRGMv2_4005_1_20 23711 26860 + 1.B.14.6.1
Gene ID: HRGMv2_4005_1_7
Type: CAZyme
Location: 7657 - 8592 (+)
Gene ID: HRGMv2_4005_1_8
Type:
Location: 8589 - 8723 (+)
Gene ID: HRGMv2_4005_1_9
Type: CAZyme
Location: 9033 - 10730 (+)
Gene ID: HRGMv2_4005_1_10
Type: CAZyme
Location: 10935 - 12212 (+)
Gene ID: HRGMv2_4005_1_11
Type: CAZyme
Location: 12209 - 12985 (+)
Gene ID: HRGMv2_4005_1_12
Type: pfam
Location: 13077 - 14474 (+)
Gene ID: HRGMv2_4005_1_13
Type: pfam
Location: 14840 - 15730 (+)
Gene ID: HRGMv2_4005_1_14
Type: TC
Location: 15780 - 17447 (+)
Gene ID: HRGMv2_4005_1_15
Type: sulfatase
Location: 17494 - 18501 (+)
Gene ID: HRGMv2_4005_1_16
Type:
Location: 18521 - 18784 (+)
Gene ID: HRGMv2_4005_1_17
Type: CAZyme
Location: 18806 - 19774 (+)
Gene ID: HRGMv2_4005_1_18
Type: pfam
Location: 19891 - 21309 (+)
Gene ID: HRGMv2_4005_1_19
Type:
Location: 21713 - 23527 (+)
Gene ID: HRGMv2_4005_1_20
Type: TC
Location: 23711 - 26860 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4005_1_18 vegan > omnivore 1.13994 0.04820

🧭 Explore Read Mapping of CGC

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