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Cluster: HRGMv2_4004_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4004_2 HRGMv2_4004_2_62 73805 76483 + GH77
TC HRGMv2_4004_2 HRGMv2_4004_2_63 76601 77194 + 2.A.51.1.6
TC HRGMv2_4004_2 HRGMv2_4004_2_64 77191 77718 + 2.A.51.1.6
pfam HRGMv2_4004_2 HRGMv2_4004_2_65 77720 78997 + Mur_ligase_C | Mur_ligase_M
CAZyme HRGMv2_4004_2 HRGMv2_4004_2_66 79055 80242 + GT4
CAZyme HRGMv2_4004_2 HRGMv2_4004_2_67 80250 81200 + GT8
CAZyme HRGMv2_4004_2 HRGMv2_4004_2_68 81197 82027 + GT2
pfam HRGMv2_4004_2 HRGMv2_4004_2_69 82049 83131 + GLF | NAD_binding_8
CAZyme HRGMv2_4004_2 HRGMv2_4004_2_70 83124 84164 - GT113
Gene ID: HRGMv2_4004_2_62
Type: CAZyme
Location: 73805 - 76483 (+)
Gene ID: HRGMv2_4004_2_63
Type: TC
Location: 76601 - 77194 (+)
Gene ID: HRGMv2_4004_2_64
Type: TC
Location: 77191 - 77718 (+)
Gene ID: HRGMv2_4004_2_65
Type: pfam
Location: 77720 - 78997 (+)
Gene ID: HRGMv2_4004_2_66
Type: CAZyme
Location: 79055 - 80242 (+)
Gene ID: HRGMv2_4004_2_67
Type: CAZyme
Location: 80250 - 81200 (+)
Gene ID: HRGMv2_4004_2_68
Type: CAZyme
Location: 81197 - 82027 (+)
Gene ID: HRGMv2_4004_2_69
Type: pfam
Location: 82049 - 83131 (+)
Gene ID: HRGMv2_4004_2_70
Type: CAZyme
Location: 83124 - 84164 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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