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Cluster: HRGMv2_4004_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4004_40 HRGMv2_4004_40_3 1185 2186 + GT2
TF HRGMv2_4004_40 HRGMv2_4004_40_4 2190 2543 - GntR
NULL(UNKNOWN) HRGMv2_4004_40 HRGMv2_4004_40_5 2553 3281 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4004_40 HRGMv2_4004_40_6 3294 4103 - 3.A.1.132.6
peptidase HRGMv2_4004_40 HRGMv2_4004_40_7 4138 5016 - G04.UNW
peptidase HRGMv2_4004_40 HRGMv2_4004_40_8 5225 5794 + C56.UNW
CAZyme HRGMv2_4004_40 HRGMv2_4004_40_9 5857 7056 + GT4
pfam HRGMv2_4004_40 HRGMv2_4004_40_10 7089 8153 + Radical_SAM | SPASM
CAZyme HRGMv2_4004_40 HRGMv2_4004_40_11 8171 9265 + GT4
Gene ID: HRGMv2_4004_40_3
Type: CAZyme
Location: 1185 - 2186 (+)
Gene ID: HRGMv2_4004_40_4
Type: TF
Location: 2190 - 2543 (-)
Gene ID: HRGMv2_4004_40_5
Type:
Location: 2553 - 3281 (-)
Gene ID: HRGMv2_4004_40_6
Type: TC
Location: 3294 - 4103 (-)
Gene ID: HRGMv2_4004_40_7
Type: peptidase
Location: 4138 - 5016 (-)
Gene ID: HRGMv2_4004_40_8
Type: peptidase
Location: 5225 - 5794 (+)
Gene ID: HRGMv2_4004_40_9
Type: CAZyme
Location: 5857 - 7056 (+)
Gene ID: HRGMv2_4004_40_10
Type: pfam
Location: 7089 - 8153 (+)
Gene ID: HRGMv2_4004_40_11
Type: CAZyme
Location: 8171 - 9265 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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