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Cluster: HRGMv2_4004_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_19 21023 23065 - GH67
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_20 23043 24026 - GH43_1
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_21 24048 25160 - GH10
TC HRGMv2_4004_28 HRGMv2_4004_28_22 25226 26656 - 2.A.2.3.2
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_23 26681 28396 - CE20 | CE20
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_24 28405 30099 - GH35
CAZyme HRGMv2_4004_28 HRGMv2_4004_28_25 30261 32624 - GH10
pfam HRGMv2_4004_28 HRGMv2_4004_28_26 32648 34081 - SGBP_B_XBD
pfam HRGMv2_4004_28 HRGMv2_4004_28_27 34099 35778 - SusD_RagB | SusD-like_3
TC HRGMv2_4004_28 HRGMv2_4004_28_28 35799 38873 - 1.B.14.6.1
Gene ID: HRGMv2_4004_28_19
Type: CAZyme
Location: 21023 - 23065 (-)
Gene ID: HRGMv2_4004_28_20
Type: CAZyme
Location: 23043 - 24026 (-)
Gene ID: HRGMv2_4004_28_21
Type: CAZyme
Location: 24048 - 25160 (-)
Gene ID: HRGMv2_4004_28_22
Type: TC
Location: 25226 - 26656 (-)
Gene ID: HRGMv2_4004_28_23
Type: CAZyme
Location: 26681 - 28396 (-)
Gene ID: HRGMv2_4004_28_24
Type: CAZyme
Location: 28405 - 30099 (-)
Gene ID: HRGMv2_4004_28_25
Type: CAZyme
Location: 30261 - 32624 (-)
Gene ID: HRGMv2_4004_28_26
Type: pfam
Location: 32648 - 34081 (-)
Gene ID: HRGMv2_4004_28_27
Type: pfam
Location: 34099 - 35778 (-)
Gene ID: HRGMv2_4004_28_28
Type: TC
Location: 35799 - 38873 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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