dbCAN Logo

Cluster: HRGMv2_4004_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4004_18 HRGMv2_4004_18_26 22089 24368 + GH92
CAZyme HRGMv2_4004_18 HRGMv2_4004_18_27 24397 26586 + GH92
TC HRGMv2_4004_18 HRGMv2_4004_18_28 26613 29672 + 1.B.14.6.1
pfam HRGMv2_4004_18 HRGMv2_4004_18_29 29691 31577 + SusD_RagB | SusD-like_3
pfam HRGMv2_4004_18 HRGMv2_4004_18_30 31598 32341 + DUF3823 | DUF3823_C
CAZyme HRGMv2_4004_18 HRGMv2_4004_18_31 32375 34933 + GH3
CAZyme HRGMv2_4004_18 HRGMv2_4004_18_32 34930 37698 + CBM6
pfam HRGMv2_4004_18 HRGMv2_4004_18_33 37741 39423 + CBM_6
CAZyme HRGMv2_4004_18 HRGMv2_4004_18_34 39512 40534 + GH43_34
Gene ID: HRGMv2_4004_18_26
Type: CAZyme
Location: 22089 - 24368 (+)
Gene ID: HRGMv2_4004_18_27
Type: CAZyme
Location: 24397 - 26586 (+)
Gene ID: HRGMv2_4004_18_28
Type: TC
Location: 26613 - 29672 (+)
Gene ID: HRGMv2_4004_18_29
Type: pfam
Location: 29691 - 31577 (+)
Gene ID: HRGMv2_4004_18_30
Type: pfam
Location: 31598 - 32341 (+)
Gene ID: HRGMv2_4004_18_31
Type: CAZyme
Location: 32375 - 34933 (+)
Gene ID: HRGMv2_4004_18_32
Type: CAZyme
Location: 34930 - 37698 (+)
Gene ID: HRGMv2_4004_18_33
Type: pfam
Location: 37741 - 39423 (+)
Gene ID: HRGMv2_4004_18_34
Type: CAZyme
Location: 39512 - 40534 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List