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Cluster: HRGMv2_4004_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4004_16 HRGMv2_4004_16_12 11774 12745 - 1.A.34.1.3
pfam HRGMv2_4004_16 HRGMv2_4004_16_13 12883 13692 - Aldolase_II
TC HRGMv2_4004_16 HRGMv2_4004_16_14 13712 14746 - 2.A.7.6.1
pfam HRGMv2_4004_16 HRGMv2_4004_16_15 14743 15996 - RhaA
pfam HRGMv2_4004_16 HRGMv2_4004_16_16 16003 17439 - FGGY_N | FGGY_C
CAZyme HRGMv2_4004_16 HRGMv2_4004_16_17 17458 19098 - CE12 | CE12
pfam HRGMv2_4004_16 HRGMv2_4004_16_18 19110 19427 - rhaM
CAZyme HRGMv2_4004_16 HRGMv2_4004_16_19 19560 21989 + GH2
pfam HRGMv2_4004_16 HRGMv2_4004_16_20 22038 24665 + tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Val_tRNA-synt_C | tRNA-synt_1_2
CAZyme HRGMv2_4004_16 HRGMv2_4004_16_21 24662 25930 + CE15
pfam HRGMv2_4004_16 HRGMv2_4004_16_22 25921 26568 - OMP_b-brl_2
TC HRGMv2_4004_16 HRGMv2_4004_16_23 26677 27897 + 9.B.10.1.1
Gene ID: HRGMv2_4004_16_12
Type: TC
Location: 11774 - 12745 (-)
Gene ID: HRGMv2_4004_16_13
Type: pfam
Location: 12883 - 13692 (-)
Gene ID: HRGMv2_4004_16_14
Type: TC
Location: 13712 - 14746 (-)
Gene ID: HRGMv2_4004_16_15
Type: pfam
Location: 14743 - 15996 (-)
Gene ID: HRGMv2_4004_16_16
Type: pfam
Location: 16003 - 17439 (-)
Gene ID: HRGMv2_4004_16_17
Type: CAZyme
Location: 17458 - 19098 (-)
Gene ID: HRGMv2_4004_16_18
Type: pfam
Location: 19110 - 19427 (-)
Gene ID: HRGMv2_4004_16_19
Type: CAZyme
Location: 19560 - 21989 (+)
Gene ID: HRGMv2_4004_16_20
Type: pfam
Location: 22038 - 24665 (+)
Gene ID: HRGMv2_4004_16_21
Type: CAZyme
Location: 24662 - 25930 (+)
Gene ID: HRGMv2_4004_16_22
Type: pfam
Location: 25921 - 26568 (-)
Gene ID: HRGMv2_4004_16_23
Type: TC
Location: 26677 - 27897 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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