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Cluster: HRGMv2_4004_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4004_10 HRGMv2_4004_10_48 50690 52075 + 9.B.18.1.1
TC HRGMv2_4004_10 HRGMv2_4004_10_49 52085 53890 + 2.A.16.2.2
STP HRGMv2_4004_10 HRGMv2_4004_10_50 53895 54473 + cNMP_binding
TC HRGMv2_4004_10 HRGMv2_4004_10_51 54623 55795 + 2.A.6.2.47
TC HRGMv2_4004_10 HRGMv2_4004_10_52 55847 59215 + 2.A.6.2.22
TC HRGMv2_4004_10 HRGMv2_4004_10_53 59237 60619 + 1.B.17.3.6
pfam HRGMv2_4004_10 HRGMv2_4004_10_54 60647 61432 + Hexapep | Hexapep | Acetyltransf_11
pfam HRGMv2_4004_10 HRGMv2_4004_10_55 61562 62536 + DAGK_cat | YegS_C
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_56 62688 64631 + GH133
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_57 64642 65907 + GT4
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_58 65942 67393 + GH57
Gene ID: HRGMv2_4004_10_48
Type: TC
Location: 50690 - 52075 (+)
Gene ID: HRGMv2_4004_10_49
Type: TC
Location: 52085 - 53890 (+)
Gene ID: HRGMv2_4004_10_50
Type: STP
Location: 53895 - 54473 (+)
Gene ID: HRGMv2_4004_10_51
Type: TC
Location: 54623 - 55795 (+)
Gene ID: HRGMv2_4004_10_52
Type: TC
Location: 55847 - 59215 (+)
Gene ID: HRGMv2_4004_10_53
Type: TC
Location: 59237 - 60619 (+)
Gene ID: HRGMv2_4004_10_54
Type: pfam
Location: 60647 - 61432 (+)
Gene ID: HRGMv2_4004_10_55
Type: pfam
Location: 61562 - 62536 (+)
Gene ID: HRGMv2_4004_10_56
Type: CAZyme
Location: 62688 - 64631 (+)
Gene ID: HRGMv2_4004_10_57
Type: CAZyme
Location: 64642 - 65907 (+)
Gene ID: HRGMv2_4004_10_58
Type: CAZyme
Location: 65942 - 67393 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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