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Cluster: HRGMv2_4004_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4004_10 HRGMv2_4004_10_36 35169 38387 - 1.B.14.6.1
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_37 38542 39810 - CE7
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_38 39824 41122 - GH5_7
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_39 41200 42648 - CE20
CAZyme HRGMv2_4004_10 HRGMv2_4004_10_40 42667 43746 - GH5_2
TF HRGMv2_4004_10 HRGMv2_4004_10_41 43743 44618 - HTH_AraC | HTH_AraC
pfam HRGMv2_4004_10 HRGMv2_4004_10_42 44798 45373 + DUF308 | DUF308
TC HRGMv2_4004_10 HRGMv2_4004_10_43 45413 46075 - 2.A.115.2.14
Gene ID: HRGMv2_4004_10_36
Type: TC
Location: 35169 - 38387 (-)
Gene ID: HRGMv2_4004_10_37
Type: CAZyme
Location: 38542 - 39810 (-)
Gene ID: HRGMv2_4004_10_38
Type: CAZyme
Location: 39824 - 41122 (-)
Gene ID: HRGMv2_4004_10_39
Type: CAZyme
Location: 41200 - 42648 (-)
Gene ID: HRGMv2_4004_10_40
Type: CAZyme
Location: 42667 - 43746 (-)
Gene ID: HRGMv2_4004_10_41
Type: TF
Location: 43743 - 44618 (-)
Gene ID: HRGMv2_4004_10_42
Type: pfam
Location: 44798 - 45373 (+)
Gene ID: HRGMv2_4004_10_43
Type: TC
Location: 45413 - 46075 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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