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Cluster: HRGMv2_4004_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4004_8 HRGMv2_4004_8_3 1283 2869 - 8.A.46.1.1
TC HRGMv2_4004_8 HRGMv2_4004_8_4 2889 6020 - 1.B.14.6.1
pfam HRGMv2_4004_8 HRGMv2_4004_8_5 6490 9840 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
TC HRGMv2_4004_8 HRGMv2_4004_8_6 9874 11556 - 9.B.174.1.1
CAZyme HRGMv2_4004_8 HRGMv2_4004_8_7 11688 13691 - GH13_8
TC HRGMv2_4004_8 HRGMv2_4004_8_8 13818 16595 - 1.B.42.1.8
pfam HRGMv2_4004_8 HRGMv2_4004_8_9 16809 21599 + TamB
pfam HRGMv2_4004_8 HRGMv2_4004_8_10 21568 23895 + Omp85
TC HRGMv2_4004_8 HRGMv2_4004_8_11 23969 25453 - 2.A.1.1.3
Gene ID: HRGMv2_4004_8_3
Type: TC
Location: 1283 - 2869 (-)
Gene ID: HRGMv2_4004_8_4
Type: TC
Location: 2889 - 6020 (-)
Gene ID: HRGMv2_4004_8_5
Type: pfam
Location: 6490 - 9840 (-)
Gene ID: HRGMv2_4004_8_6
Type: TC
Location: 9874 - 11556 (-)
Gene ID: HRGMv2_4004_8_7
Type: CAZyme
Location: 11688 - 13691 (-)
Gene ID: HRGMv2_4004_8_8
Type: TC
Location: 13818 - 16595 (-)
Gene ID: HRGMv2_4004_8_9
Type: pfam
Location: 16809 - 21599 (+)
Gene ID: HRGMv2_4004_8_10
Type: pfam
Location: 21568 - 23895 (+)
Gene ID: HRGMv2_4004_8_11
Type: TC
Location: 23969 - 25453 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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