Cluster: HRGMv2_4003_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4003_7 | HRGMv2_4003_7_2 | 506 | 2344 | - | 2.A.47.4.8 |
| NULL(UNKNOWN) | HRGMv2_4003_7 | HRGMv2_4003_7_3 | 2396 | 2584 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4003_7 | HRGMv2_4003_7_4 | 2943 | 4838 | + | 2.A.47.4.8 |
| pfam | HRGMv2_4003_7 | HRGMv2_4003_7_5 | 5086 | 6447 | - | HGTP_anticodon | tRNA-synt_His |
| pfam | HRGMv2_4003_7 | HRGMv2_4003_7_6 | 6752 | 9592 | + | tRNA-synt_1 | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | HRGMv2_4003_7 | HRGMv2_4003_7_7 | 9975 | 11024 | + | 2.A.115.1.5 |
| CAZyme | HRGMv2_4003_7 | HRGMv2_4003_7_8 | 11043 | 11864 | + | GT23 |
| NULL(UNKNOWN) | HRGMv2_4003_7 | HRGMv2_4003_7_9 | 12169 | 13734 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_4003_7 | HRGMv2_4003_7_10 | 14040 | 15446 | + | HTH_8 |
| TC | HRGMv2_4003_7 | HRGMv2_4003_7_11 | 15979 | 17382 | + | 5.B.3.1.1 |
| pfam | HRGMv2_4003_7 | HRGMv2_4003_7_12 | 17893 | 19188 | - | tRNA-synt_1b | SYY_C-terminal |
| TC | HRGMv2_4003_7 | HRGMv2_4003_7_13 | 19336 | 20838 | - | 3.D.4.3.2 |
Gene ID: HRGMv2_4003_7_2
Type: TC
Location: 506 - 2344 (-)
Type: TC
Location: 506 - 2344 (-)
Gene ID: HRGMv2_4003_7_3
Type:
Location: 2396 - 2584 (-)
Type:
Location: 2396 - 2584 (-)
Gene ID: HRGMv2_4003_7_4
Type: TC
Location: 2943 - 4838 (+)
Type: TC
Location: 2943 - 4838 (+)
Gene ID: HRGMv2_4003_7_5
Type: pfam
Location: 5086 - 6447 (-)
Type: pfam
Location: 5086 - 6447 (-)
Gene ID: HRGMv2_4003_7_6
Type: pfam
Location: 6752 - 9592 (+)
Type: pfam
Location: 6752 - 9592 (+)
Gene ID: HRGMv2_4003_7_7
Type: TC
Location: 9975 - 11024 (+)
Type: TC
Location: 9975 - 11024 (+)
Gene ID: HRGMv2_4003_7_8
Type: CAZyme
Location: 11043 - 11864 (+)
Type: CAZyme
Location: 11043 - 11864 (+)
Gene ID: HRGMv2_4003_7_9
Type:
Location: 12169 - 13734 (-)
Type:
Location: 12169 - 13734 (-)
Gene ID: HRGMv2_4003_7_10
Type: TF
Location: 14040 - 15446 (+)
Type: TF
Location: 14040 - 15446 (+)
Gene ID: HRGMv2_4003_7_11
Type: TC
Location: 15979 - 17382 (+)
Type: TC
Location: 15979 - 17382 (+)
Gene ID: HRGMv2_4003_7_12
Type: pfam
Location: 17893 - 19188 (-)
Type: pfam
Location: 17893 - 19188 (-)
Gene ID: HRGMv2_4003_7_13
Type: TC
Location: 19336 - 20838 (-)
Type: TC
Location: 19336 - 20838 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.