Cluster: HRGMv2_4003_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4003_4 | HRGMv2_4003_4_10 | 16521 | 18710 | + | 3.A.1.112.9 |
| NULL(UNKNOWN) | HRGMv2_4003_4 | HRGMv2_4003_4_11 | 18809 | 19210 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4003_4 | HRGMv2_4003_4_12 | 19265 | 20338 | - | 9.B.97.1.11 |
| pfam | HRGMv2_4003_4 | HRGMv2_4003_4_13 | 20472 | 22970 | - | Ala_racemase_C | Ala_racemase_N | Mur_ligase_M |
| pfam | HRGMv2_4003_4 | HRGMv2_4003_4_14 | 23047 | 24021 | - | GSCFA |
| CAZyme | HRGMv2_4003_4 | HRGMv2_4003_4_15 | 24454 | 27213 | - | GH2 |
| CAZyme | HRGMv2_4003_4 | HRGMv2_4003_4_16 | 27647 | 28699 | + | GH29 |
Gene ID: HRGMv2_4003_4_10
Type: TC
Location: 16521 - 18710 (+)
Type: TC
Location: 16521 - 18710 (+)
Gene ID: HRGMv2_4003_4_11
Type:
Location: 18809 - 19210 (+)
Type:
Location: 18809 - 19210 (+)
Gene ID: HRGMv2_4003_4_12
Type: TC
Location: 19265 - 20338 (-)
Type: TC
Location: 19265 - 20338 (-)
Gene ID: HRGMv2_4003_4_13
Type: pfam
Location: 20472 - 22970 (-)
Type: pfam
Location: 20472 - 22970 (-)
Gene ID: HRGMv2_4003_4_14
Type: pfam
Location: 23047 - 24021 (-)
Type: pfam
Location: 23047 - 24021 (-)
Gene ID: HRGMv2_4003_4_15
Type: CAZyme
Location: 24454 - 27213 (-)
Type: CAZyme
Location: 24454 - 27213 (-)
Gene ID: HRGMv2_4003_4_16
Type: CAZyme
Location: 27647 - 28699 (+)
Type: CAZyme
Location: 27647 - 28699 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.