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Cluster: HRGMv2_4003_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4003_1 HRGMv2_4003_1_104 134817 135695 - 1.A.30.1.4
pfam HRGMv2_4003_1 HRGMv2_4003_1_105 135854 136774 - PseudoU_synth_2
pfam HRGMv2_4003_1 HRGMv2_4003_1_106 137015 137563 + DUF3575
TC HRGMv2_4003_1 HRGMv2_4003_1_107 137805 139874 + 1.B.14.6.8
NULL(UNKNOWN) HRGMv2_4003_1 HRGMv2_4003_1_108 139948 142770 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4003_1 HRGMv2_4003_1_109 143115 143678 - DUF4252
CAZyme HRGMv2_4003_1 HRGMv2_4003_1_110 143695 147762 - GH2
CAZyme HRGMv2_4003_1 HRGMv2_4003_1_111 148688 152203 + GH95
Gene ID: HRGMv2_4003_1_104
Type: TC
Location: 134817 - 135695 (-)
Gene ID: HRGMv2_4003_1_105
Type: pfam
Location: 135854 - 136774 (-)
Gene ID: HRGMv2_4003_1_106
Type: pfam
Location: 137015 - 137563 (+)
Gene ID: HRGMv2_4003_1_107
Type: TC
Location: 137805 - 139874 (+)
Gene ID: HRGMv2_4003_1_108
Type:
Location: 139948 - 142770 (+)
Gene ID: HRGMv2_4003_1_109
Type: pfam
Location: 143115 - 143678 (-)
Gene ID: HRGMv2_4003_1_110
Type: CAZyme
Location: 143695 - 147762 (-)
Gene ID: HRGMv2_4003_1_111
Type: CAZyme
Location: 148688 - 152203 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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