Cluster: HRGMv2_4003_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_4003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4003_56 | HRGMv2_4003_56_4 | 2269 | 3309 | + | GT2 |
| pfam | HRGMv2_4003_56 | HRGMv2_4003_56_5 | 3317 | 4087 | + | TP_methylase |
| TC | HRGMv2_4003_56 | HRGMv2_4003_56_6 | 4166 | 4540 | + | 1.A.43.1.2 |
| pfam | HRGMv2_4003_56 | HRGMv2_4003_56_7 | 4742 | 6988 | + | PHO4 |
| pfam | HRGMv2_4003_56 | HRGMv2_4003_56_8 | 7040 | 7432 | + | rhaM |
| CAZyme | HRGMv2_4003_56 | HRGMv2_4003_56_9 | 7967 | 9649 | + | GT3 |
| CAZyme | HRGMv2_4003_56 | HRGMv2_4003_56_10 | 9661 | 12294 | + | GT35 |
Gene ID: HRGMv2_4003_56_4
Type: CAZyme
Location: 2269 - 3309 (+)
Type: CAZyme
Location: 2269 - 3309 (+)
Gene ID: HRGMv2_4003_56_5
Type: pfam
Location: 3317 - 4087 (+)
Type: pfam
Location: 3317 - 4087 (+)
Gene ID: HRGMv2_4003_56_6
Type: TC
Location: 4166 - 4540 (+)
Type: TC
Location: 4166 - 4540 (+)
Gene ID: HRGMv2_4003_56_7
Type: pfam
Location: 4742 - 6988 (+)
Type: pfam
Location: 4742 - 6988 (+)
Gene ID: HRGMv2_4003_56_8
Type: pfam
Location: 7040 - 7432 (+)
Type: pfam
Location: 7040 - 7432 (+)
Gene ID: HRGMv2_4003_56_9
Type: CAZyme
Location: 7967 - 9649 (+)
Type: CAZyme
Location: 7967 - 9649 (+)
Gene ID: HRGMv2_4003_56_10
Type: CAZyme
Location: 9661 - 12294 (+)
Type: CAZyme
Location: 9661 - 12294 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.