Cluster: HRGMv2_4003_CGC30
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_4003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_3 | 2629 | 3522 | - | GT14 |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_4 | 3533 | 4486 | - | ATP-grasp_3 | ATPgrasp_Ter | PylC-like_N |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_5 | 4532 | 5140 | - | Hexapep | PglD_N |
| TC | HRGMv2_4003_51 | HRGMv2_4003_51_6 | 5145 | 5777 | - | 9.B.18.1.2 |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_7 | 6372 | 7967 | - | PDDEXK_9 | AAA-ATPase_like |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_8 | 8210 | 9310 | - | NTP_transf_5 |
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_9 | 9310 | 10467 | - | GT4 |
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_10 | 10501 | 11286 | - | GT2 |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_11 | 11300 | 12415 | - | EpsG |
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_12 | 12449 | 13453 | - | GT2 |
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_13 | 13466 | 14590 | - | GT4 |
| pfam | HRGMv2_4003_51 | HRGMv2_4003_51_14 | 14587 | 15642 | - | PS_pyruv_trans |
| CAZyme | HRGMv2_4003_51 | HRGMv2_4003_51_15 | 15686 | 16642 | - | GT2 |
Gene ID: HRGMv2_4003_51_3
Type: CAZyme
Location: 2629 - 3522 (-)
Type: CAZyme
Location: 2629 - 3522 (-)
Gene ID: HRGMv2_4003_51_4
Type: pfam
Location: 3533 - 4486 (-)
Type: pfam
Location: 3533 - 4486 (-)
Gene ID: HRGMv2_4003_51_5
Type: pfam
Location: 4532 - 5140 (-)
Type: pfam
Location: 4532 - 5140 (-)
Gene ID: HRGMv2_4003_51_6
Type: TC
Location: 5145 - 5777 (-)
Type: TC
Location: 5145 - 5777 (-)
Gene ID: HRGMv2_4003_51_7
Type: pfam
Location: 6372 - 7967 (-)
Type: pfam
Location: 6372 - 7967 (-)
Gene ID: HRGMv2_4003_51_8
Type: pfam
Location: 8210 - 9310 (-)
Type: pfam
Location: 8210 - 9310 (-)
Gene ID: HRGMv2_4003_51_9
Type: CAZyme
Location: 9310 - 10467 (-)
Type: CAZyme
Location: 9310 - 10467 (-)
Gene ID: HRGMv2_4003_51_10
Type: CAZyme
Location: 10501 - 11286 (-)
Type: CAZyme
Location: 10501 - 11286 (-)
Gene ID: HRGMv2_4003_51_11
Type: pfam
Location: 11300 - 12415 (-)
Type: pfam
Location: 11300 - 12415 (-)
Gene ID: HRGMv2_4003_51_12
Type: CAZyme
Location: 12449 - 13453 (-)
Type: CAZyme
Location: 12449 - 13453 (-)
Gene ID: HRGMv2_4003_51_13
Type: CAZyme
Location: 13466 - 14590 (-)
Type: CAZyme
Location: 13466 - 14590 (-)
Gene ID: HRGMv2_4003_51_14
Type: pfam
Location: 14587 - 15642 (-)
Type: pfam
Location: 14587 - 15642 (-)
Gene ID: HRGMv2_4003_51_15
Type: CAZyme
Location: 15686 - 16642 (-)
Type: CAZyme
Location: 15686 - 16642 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.