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Cluster: HRGMv2_4001_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_4001_67 HRGMv2_4001_67_2 2022 3065 - GT4
NULL(UNKNOWN) HRGMv2_4001_67 HRGMv2_4001_67_3 3093 4565 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_4001_67 HRGMv2_4001_67_4 4569 6893 - 8.A.3.3.4
TC HRGMv2_4001_67 HRGMv2_4001_67_5 6979 7764 - 1.B.18.3.3
NULL(UNKNOWN) HRGMv2_4001_67 HRGMv2_4001_67_6 8081 8956 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_4001_67 HRGMv2_4001_67_7 8991 9593 + GtrA_DPMS_TM
TC HRGMv2_4001_67 HRGMv2_4001_67_8 9602 10288 + 4.F.1.3.2
pfam HRGMv2_4001_67 HRGMv2_4001_67_9 10285 11262 + PAP2_3
TC HRGMv2_4001_67 HRGMv2_4001_67_10 11313 12665 + 9.A.40.1.1
Gene ID: HRGMv2_4001_67_2
Type: CAZyme
Location: 2022 - 3065 (-)
Gene ID: HRGMv2_4001_67_3
Type:
Location: 3093 - 4565 (-)
Gene ID: HRGMv2_4001_67_4
Type: TC
Location: 4569 - 6893 (-)
Gene ID: HRGMv2_4001_67_5
Type: TC
Location: 6979 - 7764 (-)
Gene ID: HRGMv2_4001_67_6
Type:
Location: 8081 - 8956 (+)
Gene ID: HRGMv2_4001_67_7
Type: pfam
Location: 8991 - 9593 (+)
Gene ID: HRGMv2_4001_67_8
Type: TC
Location: 9602 - 10288 (+)
Gene ID: HRGMv2_4001_67_9
Type: pfam
Location: 10285 - 11262 (+)
Gene ID: HRGMv2_4001_67_10
Type: TC
Location: 11313 - 12665 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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