Cluster: HRGMv2_4000_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4000
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4000_97 | HRGMv2_4000_97_1 | 52 | 1128 | - | GH3 |
| CAZyme | HRGMv2_4000_97 | HRGMv2_4000_97_2 | 1277 | 3367 | - | PL1_2 |
| pfam | HRGMv2_4000_97 | HRGMv2_4000_97_3 | 3671 | 5269 | - | DUF4957 | DUF5123 |
| pfam | HRGMv2_4000_97 | HRGMv2_4000_97_4 | 5288 | 7219 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_4000_97 | HRGMv2_4000_97_5 | 7241 | 10477 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_4000_97_1
Type: CAZyme
Location: 52 - 1128 (-)
Type: CAZyme
Location: 52 - 1128 (-)
Gene ID: HRGMv2_4000_97_2
Type: CAZyme
Location: 1277 - 3367 (-)
Type: CAZyme
Location: 1277 - 3367 (-)
Gene ID: HRGMv2_4000_97_3
Type: pfam
Location: 3671 - 5269 (-)
Type: pfam
Location: 3671 - 5269 (-)
Gene ID: HRGMv2_4000_97_4
Type: pfam
Location: 5288 - 7219 (-)
Type: pfam
Location: 5288 - 7219 (-)
Gene ID: HRGMv2_4000_97_5
Type: TC
Location: 7241 - 10477 (-)
Type: TC
Location: 7241 - 10477 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.