Cluster: HRGMv2_4000_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4000
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4000_81 | HRGMv2_4000_81_1 | 3 | 1628 | + | GH25 |
| pfam | HRGMv2_4000_81 | HRGMv2_4000_81_2 | 1668 | 2072 | + | HPPK |
| peptidase | HRGMv2_4000_81 | HRGMv2_4000_81_3 | 2069 | 3322 | + | M64.UPW |
| CAZyme | HRGMv2_4000_81 | HRGMv2_4000_81_4 | 3354 | 4061 | - | GT51 |
| TC | HRGMv2_4000_81 | HRGMv2_4000_81_5 | 4071 | 4769 | - | 9.B.186.1.3 |
Gene ID: HRGMv2_4000_81_1
Type: CAZyme
Location: 3 - 1628 (+)
Type: CAZyme
Location: 3 - 1628 (+)
Gene ID: HRGMv2_4000_81_2
Type: pfam
Location: 1668 - 2072 (+)
Type: pfam
Location: 1668 - 2072 (+)
Gene ID: HRGMv2_4000_81_3
Type: peptidase
Location: 2069 - 3322 (+)
Type: peptidase
Location: 2069 - 3322 (+)
Gene ID: HRGMv2_4000_81_4
Type: CAZyme
Location: 3354 - 4061 (-)
Type: CAZyme
Location: 3354 - 4061 (-)
Gene ID: HRGMv2_4000_81_5
Type: TC
Location: 4071 - 4769 (-)
Type: TC
Location: 4071 - 4769 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella rodentium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.