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Cluster: HRGMv2_3999_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3999_6 HRGMv2_3999_6_12 13726 14472 - 1.B.44.1.2
pfam HRGMv2_3999_6 HRGMv2_3999_6_13 15094 15852 + CTP_transf_3 | NTP_transf_3
pfam HRGMv2_3999_6 HRGMv2_3999_6_14 16006 17862 - MutS_V
CAZyme HRGMv2_3999_6 HRGMv2_3999_6_15 18242 20509 - GH3
CAZyme HRGMv2_3999_6 HRGMv2_3999_6_16 20519 22747 - GH3
CAZyme HRGMv2_3999_6 HRGMv2_3999_6_17 23296 24381 - GH16_3
NULL(UNKNOWN) HRGMv2_3999_6 HRGMv2_3999_6_18 24409 26244 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3999_6 HRGMv2_3999_6_19 26289 27821 - SusD_RagB | SusD-like_3
TC HRGMv2_3999_6 HRGMv2_3999_6_20 27860 31006 - 1.B.14.6.1
Gene ID: HRGMv2_3999_6_12
Type: TC
Location: 13726 - 14472 (-)
Gene ID: HRGMv2_3999_6_13
Type: pfam
Location: 15094 - 15852 (+)
Gene ID: HRGMv2_3999_6_14
Type: pfam
Location: 16006 - 17862 (-)
Gene ID: HRGMv2_3999_6_15
Type: CAZyme
Location: 18242 - 20509 (-)
Gene ID: HRGMv2_3999_6_16
Type: CAZyme
Location: 20519 - 22747 (-)
Gene ID: HRGMv2_3999_6_17
Type: CAZyme
Location: 23296 - 24381 (-)
Gene ID: HRGMv2_3999_6_18
Type:
Location: 24409 - 26244 (-)
Gene ID: HRGMv2_3999_6_19
Type: pfam
Location: 26289 - 27821 (-)
Gene ID: HRGMv2_3999_6_20
Type: TC
Location: 27860 - 31006 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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