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Cluster: HRGMv2_3999_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3999_2 HRGMv2_3999_2_39 51694 52899 - 2.A.1.7.17
CAZyme HRGMv2_3999_2 HRGMv2_3999_2_40 52964 54808 - GH32
NULL(UNKNOWN) HRGMv2_3999_2 HRGMv2_3999_2_41 54789 54974 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_3999_2 HRGMv2_3999_2_42 54971 56425 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3999_2 HRGMv2_3999_2_43 56687 58240 - GH32
pfam HRGMv2_3999_2 HRGMv2_3999_2_44 58327 59700 - DUF4960
pfam HRGMv2_3999_2 HRGMv2_3999_2_45 59783 61522 - SusD_RagB | SusD-like_3
TC HRGMv2_3999_2 HRGMv2_3999_2_46 61542 64664 - 1.B.14.6.1
Gene ID: HRGMv2_3999_2_39
Type: TC
Location: 51694 - 52899 (-)
Gene ID: HRGMv2_3999_2_40
Type: CAZyme
Location: 52964 - 54808 (-)
Gene ID: HRGMv2_3999_2_41
Type:
Location: 54789 - 54974 (-)
Gene ID: HRGMv2_3999_2_42
Type:
Location: 54971 - 56425 (-)
Gene ID: HRGMv2_3999_2_43
Type: CAZyme
Location: 56687 - 58240 (-)
Gene ID: HRGMv2_3999_2_44
Type: pfam
Location: 58327 - 59700 (-)
Gene ID: HRGMv2_3999_2_45
Type: pfam
Location: 59783 - 61522 (-)
Gene ID: HRGMv2_3999_2_46
Type: TC
Location: 61542 - 64664 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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