Cluster: HRGMv2_3999_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3999
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3999_1 | HRGMv2_3999_1_106 | 143788 | 144738 | + | CBM50 |
| CAZyme | HRGMv2_3999_1 | HRGMv2_3999_1_107 | 145796 | 147070 | + | GT4 |
| CAZyme | HRGMv2_3999_1 | HRGMv2_3999_1_108 | 147073 | 147846 | + | GT2 |
| pfam | HRGMv2_3999_1 | HRGMv2_3999_1_109 | 147861 | 148973 | - | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23 |
| TC | HRGMv2_3999_1 | HRGMv2_3999_1_110 | 149053 | 150315 | - | 3.A.1.122.2 |
| TC | HRGMv2_3999_1 | HRGMv2_3999_1_111 | 150321 | 151580 | - | 3.A.1.122.2 |
| TC | HRGMv2_3999_1 | HRGMv2_3999_1_112 | 151654 | 152376 | - | 3.A.1.122.2 |
| TC | HRGMv2_3999_1 | HRGMv2_3999_1_113 | 152663 | 154339 | - | 3.A.1.106.2 |
| pfam | HRGMv2_3999_1 | HRGMv2_3999_1_114 | 154403 | 155293 | - | NAD_kinase | NAD_kinase_C |
| pfam | HRGMv2_3999_1 | HRGMv2_3999_1_115 | 155341 | 155823 | - | YgbB |
| TC | HRGMv2_3999_1 | HRGMv2_3999_1_116 | 155944 | 157110 | - | 1.B.57.4.6 |
Gene ID: HRGMv2_3999_1_106
Type: CAZyme
Location: 143788 - 144738 (+)
Type: CAZyme
Location: 143788 - 144738 (+)
Gene ID: HRGMv2_3999_1_107
Type: CAZyme
Location: 145796 - 147070 (+)
Type: CAZyme
Location: 145796 - 147070 (+)
Gene ID: HRGMv2_3999_1_108
Type: CAZyme
Location: 147073 - 147846 (+)
Type: CAZyme
Location: 147073 - 147846 (+)
Gene ID: HRGMv2_3999_1_109
Type: pfam
Location: 147861 - 148973 (-)
Type: pfam
Location: 147861 - 148973 (-)
Gene ID: HRGMv2_3999_1_110
Type: TC
Location: 149053 - 150315 (-)
Type: TC
Location: 149053 - 150315 (-)
Gene ID: HRGMv2_3999_1_111
Type: TC
Location: 150321 - 151580 (-)
Type: TC
Location: 150321 - 151580 (-)
Gene ID: HRGMv2_3999_1_112
Type: TC
Location: 151654 - 152376 (-)
Type: TC
Location: 151654 - 152376 (-)
Gene ID: HRGMv2_3999_1_113
Type: TC
Location: 152663 - 154339 (-)
Type: TC
Location: 152663 - 154339 (-)
Gene ID: HRGMv2_3999_1_114
Type: pfam
Location: 154403 - 155293 (-)
Type: pfam
Location: 154403 - 155293 (-)
Gene ID: HRGMv2_3999_1_115
Type: pfam
Location: 155341 - 155823 (-)
Type: pfam
Location: 155341 - 155823 (-)
Gene ID: HRGMv2_3999_1_116
Type: TC
Location: 155944 - 157110 (-)
Type: TC
Location: 155944 - 157110 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.