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Cluster: HRGMv2_3999_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3999_119 HRGMv2_3999_119_1 363 2888 - 1.B.14.6.14
pfam HRGMv2_3999_119 HRGMv2_3999_119_2 3032 3502 + PgpA
pfam HRGMv2_3999_119 HRGMv2_3999_119_3 3517 3912 + GtrA_DPMS_TM
TC HRGMv2_3999_119 HRGMv2_3999_119_4 3909 4544 + 4.F.1.3.2
pfam HRGMv2_3999_119 HRGMv2_3999_119_5 4547 5374 + PAP2_3
pfam HRGMv2_3999_119 HRGMv2_3999_119_6 5410 6084 + TrmO_N | TrmO_C
CAZyme HRGMv2_3999_119 HRGMv2_3999_119_7 6314 6958 + GH25
Gene ID: HRGMv2_3999_119_1
Type: TC
Location: 363 - 2888 (-)
Gene ID: HRGMv2_3999_119_2
Type: pfam
Location: 3032 - 3502 (+)
Gene ID: HRGMv2_3999_119_3
Type: pfam
Location: 3517 - 3912 (+)
Gene ID: HRGMv2_3999_119_4
Type: TC
Location: 3909 - 4544 (+)
Gene ID: HRGMv2_3999_119_5
Type: pfam
Location: 4547 - 5374 (+)
Gene ID: HRGMv2_3999_119_6
Type: pfam
Location: 5410 - 6084 (+)
Gene ID: HRGMv2_3999_119_7
Type: CAZyme
Location: 6314 - 6958 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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